miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6651 5' -54.1 NC_001847.1 + 1054 0.71 0.738882
Target:  5'- gCCAGAgcaagCGGCGGCGccgggcuguucgcUGCUCCCCGc -3'
miRNA:   3'- -GGUUUaa---GUCGCCGCuu-----------ACGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 1252 0.7 0.774057
Target:  5'- aCCGGccgCAGCGGCGcgccgaGCCCCCa- -3'
miRNA:   3'- -GGUUuaaGUCGCCGCuua---CGGGGGgu -5'
6651 5' -54.1 NC_001847.1 + 2071 0.69 0.845459
Target:  5'- gCAGcggUGGCGGCGAGcGCCCCgCGg -3'
miRNA:   3'- gGUUuaaGUCGCCGCUUaCGGGGgGU- -5'
6651 5' -54.1 NC_001847.1 + 2285 0.7 0.802079
Target:  5'- gCCGccgUCGGCGGCGGGgccGCCgggcggcaugggCCCCAg -3'
miRNA:   3'- -GGUuuaAGUCGCCGCUUa--CGG------------GGGGU- -5'
6651 5' -54.1 NC_001847.1 + 2367 0.67 0.904066
Target:  5'- gCCGcg-UCGGCGGCGGcgGCUuuUCGc -3'
miRNA:   3'- -GGUuuaAGUCGCCGCUuaCGGggGGU- -5'
6651 5' -54.1 NC_001847.1 + 2463 0.7 0.774057
Target:  5'- cCCGA--UCgAGCgGGCGGcgGCgCCCCCGc -3'
miRNA:   3'- -GGUUuaAG-UCG-CCGCUuaCG-GGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 2754 0.68 0.890797
Target:  5'- cCCGGcg-CGGCGGCGccggcgccgGCgCCCCCGc -3'
miRNA:   3'- -GGUUuaaGUCGCCGCuua------CG-GGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 3066 0.66 0.939904
Target:  5'- gCAGGUUgugcucguagugcagCAGC-GCGAugacGCCCCCCAc -3'
miRNA:   3'- gGUUUAA---------------GUCGcCGCUua--CGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 3847 0.71 0.714704
Target:  5'- gCCAGAaggcgUCAGCaGCGg--GCCCUCCAg -3'
miRNA:   3'- -GGUUUa----AGUCGcCGCuuaCGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 4095 0.69 0.837156
Target:  5'- cUCAGcgUCGGCGuCG-GUGCUCCCCu -3'
miRNA:   3'- -GGUUuaAGUCGCcGCuUACGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 4918 0.66 0.932936
Target:  5'- aCCGAccgcgcCGGCGGCaacagcGCCCCCCc -3'
miRNA:   3'- -GGUUuaa---GUCGCCGcuua--CGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 5621 0.67 0.904066
Target:  5'- aCAG--UCGGUGGCGAcgGUGCUCgCCu -3'
miRNA:   3'- gGUUuaAGUCGCCGCU--UACGGGgGGu -5'
6651 5' -54.1 NC_001847.1 + 5928 0.7 0.764439
Target:  5'- gCGGAUgggCGGCGGaCGAcggGCCCgCCCGc -3'
miRNA:   3'- gGUUUAa--GUCGCC-GCUua-CGGG-GGGU- -5'
6651 5' -54.1 NC_001847.1 + 7066 0.68 0.883805
Target:  5'- aCCAAgg-CAcGCGGCGA--GCCgCCCGg -3'
miRNA:   3'- -GGUUuaaGU-CGCCGCUuaCGGgGGGU- -5'
6651 5' -54.1 NC_001847.1 + 7471 0.67 0.916359
Target:  5'- ------cCAGCGGaacauCGAGUGCCUCUCAa -3'
miRNA:   3'- gguuuaaGUCGCC-----GCUUACGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 8315 0.66 0.937963
Target:  5'- gCCAGGcugUCGGCaGGaCGAucaGCCCCCgAa -3'
miRNA:   3'- -GGUUUa--AGUCG-CC-GCUua-CGGGGGgU- -5'
6651 5' -54.1 NC_001847.1 + 9454 0.72 0.673533
Target:  5'- gCAGAacccCGGCGGCGA---CCCCCCAg -3'
miRNA:   3'- gGUUUaa--GUCGCCGCUuacGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 10353 0.67 0.897552
Target:  5'- ------aCGGCGGCGAGgggGCCgCCgCCGa -3'
miRNA:   3'- gguuuaaGUCGCCGCUUa--CGG-GG-GGU- -5'
6651 5' -54.1 NC_001847.1 + 10568 0.71 0.744844
Target:  5'- gCCGGGccCGGCGcCGGcgGCCCCCCc -3'
miRNA:   3'- -GGUUUaaGUCGCcGCUuaCGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 10735 0.68 0.883805
Target:  5'- gCGAGUUUagGGgGGCGGGgccccgcgGCCCCCUc -3'
miRNA:   3'- gGUUUAAG--UCgCCGCUUa-------CGGGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.