miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6651 5' -54.1 NC_001847.1 + 58072 0.69 0.837156
Target:  5'- ----cUUCGGCGGCGAGcGCCgCCgGa -3'
miRNA:   3'- gguuuAAGUCGCCGCUUaCGGgGGgU- -5'
6651 5' -54.1 NC_001847.1 + 108741 0.7 0.764439
Target:  5'- gCGGAUgggCGGCGGaCGAcggGCCCgCCCGc -3'
miRNA:   3'- gGUUUAa--GUCGCC-GCUua-CGGG-GGGU- -5'
6651 5' -54.1 NC_001847.1 + 2463 0.7 0.774057
Target:  5'- cCCGA--UCgAGCgGGCGGcgGCgCCCCCGc -3'
miRNA:   3'- -GGUUuaAG-UCG-CCGCUuaCG-GGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 104065 0.7 0.774057
Target:  5'- aCCGGccgCAGCGGCGcgccgaGCCCCCa- -3'
miRNA:   3'- -GGUUuaaGUCGCCGCuua---CGGGGGgu -5'
6651 5' -54.1 NC_001847.1 + 119644 0.7 0.79103
Target:  5'- aCCGAGgacggggCAGCcgGGCGGGagggcaacggcgGCCCCCCAg -3'
miRNA:   3'- -GGUUUaa-----GUCG--CCGCUUa-----------CGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 67142 0.7 0.792887
Target:  5'- uCCGA---CGGCGGCGuaauaccgGCCgCCCCAa -3'
miRNA:   3'- -GGUUuaaGUCGCCGCuua-----CGG-GGGGU- -5'
6651 5' -54.1 NC_001847.1 + 105098 0.7 0.802079
Target:  5'- gCCGccgUCGGCGGCGGGgccGCCgggcggcaugggCCCCAg -3'
miRNA:   3'- -GGUuuaAGUCGCCGCUUa--CGG------------GGGGU- -5'
6651 5' -54.1 NC_001847.1 + 88885 0.69 0.811112
Target:  5'- ------gCGGCGGCGGcgGCUCCCg- -3'
miRNA:   3'- gguuuaaGUCGCCGCUuaCGGGGGgu -5'
6651 5' -54.1 NC_001847.1 + 17804 0.69 0.827798
Target:  5'- -----cUCGGCcgcggggGGCGAGgccGCCCCCCGc -3'
miRNA:   3'- gguuuaAGUCG-------CCGCUUa--CGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 113381 0.71 0.744844
Target:  5'- gCCGGGccCGGCGcCGGcgGCCCCCCc -3'
miRNA:   3'- -GGUUUaaGUCGCcGCUuaCGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 1054 0.71 0.738882
Target:  5'- gCCAGAgcaagCGGCGGCGccgggcuguucgcUGCUCCCCGc -3'
miRNA:   3'- -GGUUUaa---GUCGCCGCuu-----------ACGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 48886 0.71 0.734888
Target:  5'- cCCAGcgcgCGGgGGCGAGUGCCCUg-- -3'
miRNA:   3'- -GGUUuaa-GUCgCCGCUUACGGGGggu -5'
6651 5' -54.1 NC_001847.1 + 134159 0.74 0.559055
Target:  5'- gCCGccgcCGGCGGCGGAaGCCCCgCCGg -3'
miRNA:   3'- -GGUuuaaGUCGCCGCUUaCGGGG-GGU- -5'
6651 5' -54.1 NC_001847.1 + 22808 0.73 0.61089
Target:  5'- gUAGAUgcgggcCGGCGGCGGccGCUCCCCGc -3'
miRNA:   3'- gGUUUAa-----GUCGCCGCUuaCGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 53874 0.73 0.621338
Target:  5'- gCCGAccgccgCGGgGGCGGcggGCCCCCCGu -3'
miRNA:   3'- -GGUUuaa---GUCgCCGCUua-CGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 53080 0.72 0.652697
Target:  5'- gCCGAgcccggcucagcGUUCGGCggGGCGGcgGCCCgCCAg -3'
miRNA:   3'- -GGUU------------UAAGUCG--CCGCUuaCGGGgGGU- -5'
6651 5' -54.1 NC_001847.1 + 96630 0.72 0.673533
Target:  5'- gCCAGAgcaCAGCgccGGCGAccgcgccGCCCCCCGg -3'
miRNA:   3'- -GGUUUaa-GUCG---CCGCUua-----CGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 112267 0.72 0.673533
Target:  5'- gCAGAacccCGGCGGCGA---CCCCCCAg -3'
miRNA:   3'- gGUUUaa--GUCGCCGCUuacGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 124776 0.72 0.682867
Target:  5'- aCCGGGgggggcuUUCGGCGGCG---GCCCCCUc -3'
miRNA:   3'- -GGUUU-------AAGUCGCCGCuuaCGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 106660 0.71 0.714704
Target:  5'- gCCAGAaggcgUCAGCaGCGg--GCCCUCCAg -3'
miRNA:   3'- -GGUUUa----AGUCGcCGCuuaCGGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.