miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 3' -57 NC_001847.1 + 15550 0.7 0.671436
Target:  5'- cCGGUGcgcgcgcggCCgUCGgGCCGCGGCcgccGCUGCCc -3'
miRNA:   3'- -GCCACa--------GG-AGCaUGGUGUCG----CGACGG- -5'
6652 3' -57 NC_001847.1 + 81348 0.71 0.590111
Target:  5'- gGGgcgcagaccUCCUCGcggcgGCUGCGGUGCUGCCg -3'
miRNA:   3'- gCCac-------AGGAGCa----UGGUGUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 9664 0.71 0.600247
Target:  5'- gGGcGUCCUCGcgcCCGCcGCgaGCUGCCg -3'
miRNA:   3'- gCCaCAGGAGCau-GGUGuCG--CGACGG- -5'
6652 3' -57 NC_001847.1 + 21941 0.71 0.607357
Target:  5'- cCGGaGUCCgagcUCGUcguccgggcgcuggGCCGCGGCGCcgguUGCCg -3'
miRNA:   3'- -GCCaCAGG----AGCA--------------UGGUGUCGCG----ACGG- -5'
6652 3' -57 NC_001847.1 + 96329 0.71 0.60939
Target:  5'- uCGGUGUCggugggcggcgggCUggCGUGCgAC-GCGCUGCCg -3'
miRNA:   3'- -GCCACAG-------------GA--GCAUGgUGuCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 105771 0.7 0.620583
Target:  5'- gCGGcGgccgCCUCG-GCgGCAGCGCcGCCg -3'
miRNA:   3'- -GCCaCa---GGAGCaUGgUGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 134329 0.7 0.630768
Target:  5'- ---cGUCCUCGU-CCGCGGCGUcGUCc -3'
miRNA:   3'- gccaCAGGAGCAuGGUGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 89985 0.7 0.651132
Target:  5'- gCGGUG-CUgCGcGCCGCGGgGCUGCa -3'
miRNA:   3'- -GCCACaGGaGCaUGGUGUCgCGACGg -5'
6652 3' -57 NC_001847.1 + 133974 0.7 0.661296
Target:  5'- gCGGUGgCCUucUGcGCgGCcGCGCUGCCg -3'
miRNA:   3'- -GCCACaGGA--GCaUGgUGuCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 27309 0.71 0.590111
Target:  5'- gCGGUG-CCggcgggCGUGuCCACGGCaauCUGCCg -3'
miRNA:   3'- -GCCACaGGa-----GCAU-GGUGUCGc--GACGG- -5'
6652 3' -57 NC_001847.1 + 28307 0.71 0.55891
Target:  5'- gGGUGUguuaggccccgacCCUgCGUGCCgcucgccggcggGCAGCGCgGCCg -3'
miRNA:   3'- gCCACA-------------GGA-GCAUGG------------UGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 60434 0.72 0.52036
Target:  5'- uCGGcGUCCacgCGcGCguCGGCGCUGCCc -3'
miRNA:   3'- -GCCaCAGGa--GCaUGguGUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 133512 0.78 0.261331
Target:  5'- -cGUGUaCCUgCGcGCCGCGGUGCUGCCg -3'
miRNA:   3'- gcCACA-GGA-GCaUGGUGUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 132026 0.74 0.418302
Target:  5'- cCGGUGcUCUCGgccgcggcggGCCGCGGC-CUGCCg -3'
miRNA:   3'- -GCCACaGGAGCa---------UGGUGUCGcGACGG- -5'
6652 3' -57 NC_001847.1 + 54039 0.74 0.44497
Target:  5'- uGGaUGUCCUCGUcgGCgCGCGGCGagGCCg -3'
miRNA:   3'- gCC-ACAGGAGCA--UG-GUGUCGCgaCGG- -5'
6652 3' -57 NC_001847.1 + 77798 0.73 0.481953
Target:  5'- gCGGaUGUCUggaggaCGUGgCGCGGCGCgUGCCg -3'
miRNA:   3'- -GCC-ACAGGa-----GCAUgGUGUCGCG-ACGG- -5'
6652 3' -57 NC_001847.1 + 64424 0.72 0.500995
Target:  5'- gCGGcUGUCCUCGcgcucGCCGCGGgCGCccccGCCg -3'
miRNA:   3'- -GCC-ACAGGAGCa----UGGUGUC-GCGa---CGG- -5'
6652 3' -57 NC_001847.1 + 104170 0.72 0.504843
Target:  5'- gCGGccaUGUCCUUGcGCCcgucgagcgccggcaGCAcGCGCUGCCg -3'
miRNA:   3'- -GCC---ACAGGAGCaUGG---------------UGU-CGCGACGG- -5'
6652 3' -57 NC_001847.1 + 39579 0.72 0.510639
Target:  5'- uGGUGggCCagGUgGCCcCAGCGCUGCUg -3'
miRNA:   3'- gCCACa-GGagCA-UGGuGUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 133737 0.72 0.514519
Target:  5'- gCGGUG-CC-CGUGCCgccgcgcgaguaccgGCAGCGCgugcUGCCg -3'
miRNA:   3'- -GCCACaGGaGCAUGG---------------UGUCGCG----ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.