Results 1 - 20 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6652 | 3' | -57 | NC_001847.1 | + | 133512 | 0.78 | 0.261331 |
Target: 5'- -cGUGUaCCUgCGcGCCGCGGUGCUGCCg -3' miRNA: 3'- gcCACA-GGA-GCaUGGUGUCGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 133974 | 0.7 | 0.661296 |
Target: 5'- gCGGUGgCCUucUGcGCgGCcGCGCUGCCg -3' miRNA: 3'- -GCCACaGGA--GCaUGgUGuCGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 89985 | 0.7 | 0.651132 |
Target: 5'- gCGGUG-CUgCGcGCCGCGGgGCUGCa -3' miRNA: 3'- -GCCACaGGaGCaUGGUGUCgCGACGg -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 134329 | 0.7 | 0.630768 |
Target: 5'- ---cGUCCUCGU-CCGCGGCGUcGUCc -3' miRNA: 3'- gccaCAGGAGCAuGGUGUCGCGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 105771 | 0.7 | 0.620583 |
Target: 5'- gCGGcGgccgCCUCG-GCgGCAGCGCcGCCg -3' miRNA: 3'- -GCCaCa---GGAGCaUGgUGUCGCGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 96329 | 0.71 | 0.60939 |
Target: 5'- uCGGUGUCggugggcggcgggCUggCGUGCgAC-GCGCUGCCg -3' miRNA: 3'- -GCCACAG-------------GA--GCAUGgUGuCGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 21941 | 0.71 | 0.607357 |
Target: 5'- cCGGaGUCCgagcUCGUcguccgggcgcuggGCCGCGGCGCcgguUGCCg -3' miRNA: 3'- -GCCaCAGG----AGCA--------------UGGUGUCGCG----ACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 9664 | 0.71 | 0.600247 |
Target: 5'- gGGcGUCCUCGcgcCCGCcGCgaGCUGCCg -3' miRNA: 3'- gCCaCAGGAGCau-GGUGuCG--CGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 81348 | 0.71 | 0.590111 |
Target: 5'- gGGgcgcagaccUCCUCGcggcgGCUGCGGUGCUGCCg -3' miRNA: 3'- gCCac-------AGGAGCa----UGGUGUCGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 27309 | 0.71 | 0.590111 |
Target: 5'- gCGGUG-CCggcgggCGUGuCCACGGCaauCUGCCg -3' miRNA: 3'- -GCCACaGGa-----GCAU-GGUGUCGc--GACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 28307 | 0.71 | 0.55891 |
Target: 5'- gGGUGUguuaggccccgacCCUgCGUGCCgcucgccggcggGCAGCGCgGCCg -3' miRNA: 3'- gCCACA-------------GGA-GCAUGG------------UGUCGCGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 60434 | 0.72 | 0.52036 |
Target: 5'- uCGGcGUCCacgCGcGCguCGGCGCUGCCc -3' miRNA: 3'- -GCCaCAGGa--GCaUGguGUCGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 133737 | 0.72 | 0.514519 |
Target: 5'- gCGGUG-CC-CGUGCCgccgcgcgaguaccgGCAGCGCgugcUGCCg -3' miRNA: 3'- -GCCACaGGaGCAUGG---------------UGUCGCG----ACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 39579 | 0.72 | 0.510639 |
Target: 5'- uGGUGggCCagGUgGCCcCAGCGCUGCUg -3' miRNA: 3'- gCCACa-GGagCA-UGGuGUCGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 104170 | 0.72 | 0.504843 |
Target: 5'- gCGGccaUGUCCUUGcGCCcgucgagcgccggcaGCAcGCGCUGCCg -3' miRNA: 3'- -GCC---ACAGGAGCaUGG---------------UGU-CGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 64424 | 0.72 | 0.500995 |
Target: 5'- gCGGcUGUCCUCGcgcucGCCGCGGgCGCccccGCCg -3' miRNA: 3'- -GCC-ACAGGAGCa----UGGUGUC-GCGa---CGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 77798 | 0.73 | 0.481953 |
Target: 5'- gCGGaUGUCUggaggaCGUGgCGCGGCGCgUGCCg -3' miRNA: 3'- -GCC-ACAGGa-----GCAUgGUGUCGCG-ACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 54039 | 0.74 | 0.44497 |
Target: 5'- uGGaUGUCCUCGUcgGCgCGCGGCGagGCCg -3' miRNA: 3'- gCC-ACAGGAGCA--UG-GUGUCGCgaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 132026 | 0.74 | 0.418302 |
Target: 5'- cCGGUGcUCUCGgccgcggcggGCCGCGGC-CUGCCg -3' miRNA: 3'- -GCCACaGGAGCa---------UGGUGUCGcGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 99002 | 1.12 | 0.001446 |
Target: 5'- cCGGUGUCCUCGUACCACAGCGCUGCCu -3' miRNA: 3'- -GCCACAGGAGCAUGGUGUCGCGACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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