Results 1 - 20 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6652 | 3' | -57 | NC_001847.1 | + | 1139 | 0.68 | 0.778943 |
Target: 5'- gCGGcGgcgCCUCGgcgcgcgGCUccgGCAGCGCgGCCg -3' miRNA: 3'- -GCCaCa--GGAGCa------UGG---UGUCGCGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 1357 | 0.72 | 0.504843 |
Target: 5'- gCGGccaUGUCCUUGcGCCcgucgagcgccggcaGCAcGCGCUGCCg -3' miRNA: 3'- -GCC---ACAGGAGCaUGG---------------UGU-CGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 1953 | 0.67 | 0.788115 |
Target: 5'- cCGGcgcucGUCCUC--GCCggGCGGCGCcGCCa -3' miRNA: 3'- -GCCa----CAGGAGcaUGG--UGUCGCGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 2787 | 0.67 | 0.797148 |
Target: 5'- cCGGcGgCCUCcaggGCCGCgAGCGCgGCCg -3' miRNA: 3'- -GCCaCaGGAGca--UGGUG-UCGCGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 2958 | 0.7 | 0.630767 |
Target: 5'- gCGGcGgccgCCUCG-GCgCGCAGCGCcGCCg -3' miRNA: 3'- -GCCaCa---GGAGCaUG-GUGUCGCGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 3780 | 0.67 | 0.814762 |
Target: 5'- gGGUGUCgCcCGcGCCGCcgaAGCGCacgcgGCCg -3' miRNA: 3'- gCCACAG-GaGCaUGGUG---UCGCGa----CGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 4174 | 0.68 | 0.731308 |
Target: 5'- cCGcUGUCCUCGgACC-CGGCGUcGCUg -3' miRNA: 3'- -GCcACAGGAGCaUGGuGUCGCGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 5872 | 0.67 | 0.806033 |
Target: 5'- aGGUgGUCCagCGcUGCgCGCAGgGCgGCCg -3' miRNA: 3'- gCCA-CAGGa-GC-AUG-GUGUCgCGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 8588 | 0.69 | 0.681545 |
Target: 5'- uGGUGguuagCCgcgcgagCGUcaGCCGCAGCGCaaGCCc -3' miRNA: 3'- gCCACa----GGa------GCA--UGGUGUCGCGa-CGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 9542 | 0.69 | 0.701633 |
Target: 5'- ---cGUCCgugCGUGCgC-CAGCGCUGCa -3' miRNA: 3'- gccaCAGGa--GCAUG-GuGUCGCGACGg -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 9664 | 0.71 | 0.600247 |
Target: 5'- gGGcGUCCUCGcgcCCGCcGCgaGCUGCCg -3' miRNA: 3'- gCCaCAGGAGCau-GGUGuCG--CGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 13004 | 0.66 | 0.847959 |
Target: 5'- gGGUGgggggCCU-GUGCCgagcaguagACGGCGCagcaUGCCg -3' miRNA: 3'- gCCACa----GGAgCAUGG---------UGUCGCG----ACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 14625 | 0.67 | 0.806033 |
Target: 5'- aCGuG-GUUUUCG-ACCGCGGCGCUcgcgcGCCg -3' miRNA: 3'- -GC-CaCAGGAGCaUGGUGUCGCGA-----CGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 14964 | 0.68 | 0.750681 |
Target: 5'- uGGacgCCUCGaUGgCACGGUGCUGCg -3' miRNA: 3'- gCCacaGGAGC-AUgGUGUCGCGACGg -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 15016 | 0.66 | 0.870847 |
Target: 5'- gCGGUGgggCCgcgCGaGCCGCGGC-C-GCCg -3' miRNA: 3'- -GCCACa--GGa--GCaUGGUGUCGcGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 15550 | 0.7 | 0.671436 |
Target: 5'- cCGGUGcgcgcgcggCCgUCGgGCCGCGGCcgccGCUGCCc -3' miRNA: 3'- -GCCACa--------GG-AGCaUGGUGUCG----CGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 17993 | 0.66 | 0.863422 |
Target: 5'- ---cGcUCUCGUGuCCACAGCGCgaaguguggaUGCCa -3' miRNA: 3'- gccaCaGGAGCAU-GGUGUCGCG----------ACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 18245 | 0.66 | 0.846369 |
Target: 5'- gGGUGgauccaagauggCCgCG-ACCGCGGCGCgGCUa -3' miRNA: 3'- gCCACa-----------GGaGCaUGGUGUCGCGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 18389 | 0.72 | 0.540013 |
Target: 5'- uCGGcGUCCUCGcccugcgggcCCGCGGgGCUGUCg -3' miRNA: 3'- -GCCaCAGGAGCau--------GGUGUCgCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 18833 | 0.69 | 0.692618 |
Target: 5'- aCGGcGUCCUCGcgcgcGCCGCAcgggucagcggggcaCGCUGCCu -3' miRNA: 3'- -GCCaCAGGAGCa----UGGUGUc--------------GCGACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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