miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 3' -57 NC_001847.1 + 1139 0.68 0.778943
Target:  5'- gCGGcGgcgCCUCGgcgcgcgGCUccgGCAGCGCgGCCg -3'
miRNA:   3'- -GCCaCa--GGAGCa------UGG---UGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 1357 0.72 0.504843
Target:  5'- gCGGccaUGUCCUUGcGCCcgucgagcgccggcaGCAcGCGCUGCCg -3'
miRNA:   3'- -GCC---ACAGGAGCaUGG---------------UGU-CGCGACGG- -5'
6652 3' -57 NC_001847.1 + 1953 0.67 0.788115
Target:  5'- cCGGcgcucGUCCUC--GCCggGCGGCGCcGCCa -3'
miRNA:   3'- -GCCa----CAGGAGcaUGG--UGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 2787 0.67 0.797148
Target:  5'- cCGGcGgCCUCcaggGCCGCgAGCGCgGCCg -3'
miRNA:   3'- -GCCaCaGGAGca--UGGUG-UCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 2958 0.7 0.630767
Target:  5'- gCGGcGgccgCCUCG-GCgCGCAGCGCcGCCg -3'
miRNA:   3'- -GCCaCa---GGAGCaUG-GUGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 3780 0.67 0.814762
Target:  5'- gGGUGUCgCcCGcGCCGCcgaAGCGCacgcgGCCg -3'
miRNA:   3'- gCCACAG-GaGCaUGGUG---UCGCGa----CGG- -5'
6652 3' -57 NC_001847.1 + 4174 0.68 0.731308
Target:  5'- cCGcUGUCCUCGgACC-CGGCGUcGCUg -3'
miRNA:   3'- -GCcACAGGAGCaUGGuGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 5872 0.67 0.806033
Target:  5'- aGGUgGUCCagCGcUGCgCGCAGgGCgGCCg -3'
miRNA:   3'- gCCA-CAGGa-GC-AUG-GUGUCgCGaCGG- -5'
6652 3' -57 NC_001847.1 + 8588 0.69 0.681545
Target:  5'- uGGUGguuagCCgcgcgagCGUcaGCCGCAGCGCaaGCCc -3'
miRNA:   3'- gCCACa----GGa------GCA--UGGUGUCGCGa-CGG- -5'
6652 3' -57 NC_001847.1 + 9542 0.69 0.701633
Target:  5'- ---cGUCCgugCGUGCgC-CAGCGCUGCa -3'
miRNA:   3'- gccaCAGGa--GCAUG-GuGUCGCGACGg -5'
6652 3' -57 NC_001847.1 + 9664 0.71 0.600247
Target:  5'- gGGcGUCCUCGcgcCCGCcGCgaGCUGCCg -3'
miRNA:   3'- gCCaCAGGAGCau-GGUGuCG--CGACGG- -5'
6652 3' -57 NC_001847.1 + 13004 0.66 0.847959
Target:  5'- gGGUGgggggCCU-GUGCCgagcaguagACGGCGCagcaUGCCg -3'
miRNA:   3'- gCCACa----GGAgCAUGG---------UGUCGCG----ACGG- -5'
6652 3' -57 NC_001847.1 + 14625 0.67 0.806033
Target:  5'- aCGuG-GUUUUCG-ACCGCGGCGCUcgcgcGCCg -3'
miRNA:   3'- -GC-CaCAGGAGCaUGGUGUCGCGA-----CGG- -5'
6652 3' -57 NC_001847.1 + 14964 0.68 0.750681
Target:  5'- uGGacgCCUCGaUGgCACGGUGCUGCg -3'
miRNA:   3'- gCCacaGGAGC-AUgGUGUCGCGACGg -5'
6652 3' -57 NC_001847.1 + 15016 0.66 0.870847
Target:  5'- gCGGUGgggCCgcgCGaGCCGCGGC-C-GCCg -3'
miRNA:   3'- -GCCACa--GGa--GCaUGGUGUCGcGaCGG- -5'
6652 3' -57 NC_001847.1 + 15550 0.7 0.671436
Target:  5'- cCGGUGcgcgcgcggCCgUCGgGCCGCGGCcgccGCUGCCc -3'
miRNA:   3'- -GCCACa--------GG-AGCaUGGUGUCG----CGACGG- -5'
6652 3' -57 NC_001847.1 + 17993 0.66 0.863422
Target:  5'- ---cGcUCUCGUGuCCACAGCGCgaaguguggaUGCCa -3'
miRNA:   3'- gccaCaGGAGCAU-GGUGUCGCG----------ACGG- -5'
6652 3' -57 NC_001847.1 + 18245 0.66 0.846369
Target:  5'- gGGUGgauccaagauggCCgCG-ACCGCGGCGCgGCUa -3'
miRNA:   3'- gCCACa-----------GGaGCaUGGUGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 18389 0.72 0.540013
Target:  5'- uCGGcGUCCUCGcccugcgggcCCGCGGgGCUGUCg -3'
miRNA:   3'- -GCCaCAGGAGCau--------GGUGUCgCGACGG- -5'
6652 3' -57 NC_001847.1 + 18833 0.69 0.692618
Target:  5'- aCGGcGUCCUCGcgcgcGCCGCAcgggucagcggggcaCGCUGCCu -3'
miRNA:   3'- -GCCaCAGGAGCa----UGGUGUc--------------GCGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.