Results 1 - 20 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6652 | 3' | -57 | NC_001847.1 | + | 99002 | 1.12 | 0.001446 |
Target: 5'- cCGGUGUCCUCGUACCACAGCGCUGCCu -3' miRNA: 3'- -GCCACAGGAGCAUGGUGUCGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 118455 | 0.82 | 0.140659 |
Target: 5'- uGGUGgcggCCUCGUGCCuGCGGCGCaagGCCc -3' miRNA: 3'- gCCACa---GGAGCAUGG-UGUCGCGa--CGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 30699 | 0.78 | 0.26133 |
Target: 5'- -cGUGUaCCUgCGcGCCGCGGUGCUGCCg -3' miRNA: 3'- gcCACA-GGA-GCaUGGUGUCGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 133512 | 0.78 | 0.261331 |
Target: 5'- -cGUGUaCCUgCGcGCCGCGGUGCUGCCg -3' miRNA: 3'- gcCACA-GGA-GCaUGGUGUCGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 55345 | 0.76 | 0.31478 |
Target: 5'- aCGGUGuUCCUgGUACCACGGCgGCacgGCa -3' miRNA: 3'- -GCCAC-AGGAgCAUGGUGUCG-CGa--CGg -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 132026 | 0.74 | 0.418302 |
Target: 5'- cCGGUGcUCUCGgccgcggcggGCCGCGGC-CUGCCg -3' miRNA: 3'- -GCCACaGGAGCa---------UGGUGUCGcGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 29213 | 0.74 | 0.418302 |
Target: 5'- cCGGUGcUCUCGgccgcggcggGCCGCGGC-CUGCCg -3' miRNA: 3'- -GCCACaGGAGCa---------UGGUGUCGcGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 54039 | 0.74 | 0.44497 |
Target: 5'- uGGaUGUCCUCGUcgGCgCGCGGCGagGCCg -3' miRNA: 3'- gCC-ACAGGAGCA--UG-GUGUCGCgaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 77798 | 0.73 | 0.481953 |
Target: 5'- gCGGaUGUCUggaggaCGUGgCGCGGCGCgUGCCg -3' miRNA: 3'- -GCC-ACAGGa-----GCAUgGUGUCGCG-ACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 106670 | 0.73 | 0.491431 |
Target: 5'- gCGGcGUCCgcggcgcgUCGUGCCACGGCG--GCCa -3' miRNA: 3'- -GCCaCAGG--------AGCAUGGUGUCGCgaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 64424 | 0.72 | 0.500995 |
Target: 5'- gCGGcUGUCCUCGcgcucGCCGCGGgCGCccccGCCg -3' miRNA: 3'- -GCC-ACAGGAGCa----UGGUGUC-GCGa---CGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 1357 | 0.72 | 0.504843 |
Target: 5'- gCGGccaUGUCCUUGcGCCcgucgagcgccggcaGCAcGCGCUGCCg -3' miRNA: 3'- -GCC---ACAGGAGCaUGG---------------UGU-CGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 104170 | 0.72 | 0.504843 |
Target: 5'- gCGGccaUGUCCUUGcGCCcgucgagcgccggcaGCAcGCGCUGCCg -3' miRNA: 3'- -GCC---ACAGGAGCaUGG---------------UGU-CGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 30925 | 0.72 | 0.507737 |
Target: 5'- gCGGUG-CC-CGUGCCccgcgcgaguaccgGCAGCGCgugcUGCCg -3' miRNA: 3'- -GCCACaGGaGCAUGG--------------UGUCGCG----ACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 39579 | 0.72 | 0.510639 |
Target: 5'- uGGUGggCCagGUgGCCcCAGCGCUGCUg -3' miRNA: 3'- gCCACa-GGagCA-UGGuGUCGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 133737 | 0.72 | 0.514519 |
Target: 5'- gCGGUG-CC-CGUGCCgccgcgcgaguaccgGCAGCGCgugcUGCCg -3' miRNA: 3'- -GCCACaGGaGCAUGG---------------UGUCGCG----ACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 60434 | 0.72 | 0.52036 |
Target: 5'- uCGGcGUCCacgCGcGCguCGGCGCUGCCc -3' miRNA: 3'- -GCCaCAGGa--GCaUGguGUCGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 18389 | 0.72 | 0.540013 |
Target: 5'- uCGGcGUCCUCGcccugcgggcCCGCGGgGCUGUCg -3' miRNA: 3'- -GCCaCAGGAGCau--------GGUGUCgCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 123024 | 0.72 | 0.549933 |
Target: 5'- uGGUGUCCUCGUccggggGCCGCuggaaguacGGCcGCgggcGCCg -3' miRNA: 3'- gCCACAGGAGCA------UGGUG---------UCG-CGa---CGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 49462 | 0.72 | 0.549933 |
Target: 5'- uCGGcGUCUUCGccgGCC-UGGCGCUGCUg -3' miRNA: 3'- -GCCaCAGGAGCa--UGGuGUCGCGACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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