miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 3' -57 NC_001847.1 + 99002 1.12 0.001446
Target:  5'- cCGGUGUCCUCGUACCACAGCGCUGCCu -3'
miRNA:   3'- -GCCACAGGAGCAUGGUGUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 118455 0.82 0.140659
Target:  5'- uGGUGgcggCCUCGUGCCuGCGGCGCaagGCCc -3'
miRNA:   3'- gCCACa---GGAGCAUGG-UGUCGCGa--CGG- -5'
6652 3' -57 NC_001847.1 + 30699 0.78 0.26133
Target:  5'- -cGUGUaCCUgCGcGCCGCGGUGCUGCCg -3'
miRNA:   3'- gcCACA-GGA-GCaUGGUGUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 133512 0.78 0.261331
Target:  5'- -cGUGUaCCUgCGcGCCGCGGUGCUGCCg -3'
miRNA:   3'- gcCACA-GGA-GCaUGGUGUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 55345 0.76 0.31478
Target:  5'- aCGGUGuUCCUgGUACCACGGCgGCacgGCa -3'
miRNA:   3'- -GCCAC-AGGAgCAUGGUGUCG-CGa--CGg -5'
6652 3' -57 NC_001847.1 + 132026 0.74 0.418302
Target:  5'- cCGGUGcUCUCGgccgcggcggGCCGCGGC-CUGCCg -3'
miRNA:   3'- -GCCACaGGAGCa---------UGGUGUCGcGACGG- -5'
6652 3' -57 NC_001847.1 + 29213 0.74 0.418302
Target:  5'- cCGGUGcUCUCGgccgcggcggGCCGCGGC-CUGCCg -3'
miRNA:   3'- -GCCACaGGAGCa---------UGGUGUCGcGACGG- -5'
6652 3' -57 NC_001847.1 + 54039 0.74 0.44497
Target:  5'- uGGaUGUCCUCGUcgGCgCGCGGCGagGCCg -3'
miRNA:   3'- gCC-ACAGGAGCA--UG-GUGUCGCgaCGG- -5'
6652 3' -57 NC_001847.1 + 77798 0.73 0.481953
Target:  5'- gCGGaUGUCUggaggaCGUGgCGCGGCGCgUGCCg -3'
miRNA:   3'- -GCC-ACAGGa-----GCAUgGUGUCGCG-ACGG- -5'
6652 3' -57 NC_001847.1 + 106670 0.73 0.491431
Target:  5'- gCGGcGUCCgcggcgcgUCGUGCCACGGCG--GCCa -3'
miRNA:   3'- -GCCaCAGG--------AGCAUGGUGUCGCgaCGG- -5'
6652 3' -57 NC_001847.1 + 64424 0.72 0.500995
Target:  5'- gCGGcUGUCCUCGcgcucGCCGCGGgCGCccccGCCg -3'
miRNA:   3'- -GCC-ACAGGAGCa----UGGUGUC-GCGa---CGG- -5'
6652 3' -57 NC_001847.1 + 104170 0.72 0.504843
Target:  5'- gCGGccaUGUCCUUGcGCCcgucgagcgccggcaGCAcGCGCUGCCg -3'
miRNA:   3'- -GCC---ACAGGAGCaUGG---------------UGU-CGCGACGG- -5'
6652 3' -57 NC_001847.1 + 1357 0.72 0.504843
Target:  5'- gCGGccaUGUCCUUGcGCCcgucgagcgccggcaGCAcGCGCUGCCg -3'
miRNA:   3'- -GCC---ACAGGAGCaUGG---------------UGU-CGCGACGG- -5'
6652 3' -57 NC_001847.1 + 30925 0.72 0.507737
Target:  5'- gCGGUG-CC-CGUGCCccgcgcgaguaccgGCAGCGCgugcUGCCg -3'
miRNA:   3'- -GCCACaGGaGCAUGG--------------UGUCGCG----ACGG- -5'
6652 3' -57 NC_001847.1 + 39579 0.72 0.510639
Target:  5'- uGGUGggCCagGUgGCCcCAGCGCUGCUg -3'
miRNA:   3'- gCCACa-GGagCA-UGGuGUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 133737 0.72 0.514519
Target:  5'- gCGGUG-CC-CGUGCCgccgcgcgaguaccgGCAGCGCgugcUGCCg -3'
miRNA:   3'- -GCCACaGGaGCAUGG---------------UGUCGCG----ACGG- -5'
6652 3' -57 NC_001847.1 + 60434 0.72 0.52036
Target:  5'- uCGGcGUCCacgCGcGCguCGGCGCUGCCc -3'
miRNA:   3'- -GCCaCAGGa--GCaUGguGUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 18389 0.72 0.540013
Target:  5'- uCGGcGUCCUCGcccugcgggcCCGCGGgGCUGUCg -3'
miRNA:   3'- -GCCaCAGGAGCau--------GGUGUCgCGACGG- -5'
6652 3' -57 NC_001847.1 + 123024 0.72 0.549933
Target:  5'- uGGUGUCCUCGUccggggGCCGCuggaaguacGGCcGCgggcGCCg -3'
miRNA:   3'- gCCACAGGAGCA------UGGUG---------UCG-CGa---CGG- -5'
6652 3' -57 NC_001847.1 + 49462 0.72 0.549933
Target:  5'- uCGGcGUCUUCGccgGCC-UGGCGCUGCUg -3'
miRNA:   3'- -GCCaCAGGAGCa--UGGuGUCGCGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.