Results 1 - 20 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6652 | 3' | -57 | NC_001847.1 | + | 13004 | 0.66 | 0.847959 |
Target: 5'- gGGUGgggggCCU-GUGCCgagcaguagACGGCGCagcaUGCCg -3' miRNA: 3'- gCCACa----GGAgCAUGG---------UGUCGCG----ACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 134102 | 0.66 | 0.870847 |
Target: 5'- gCGGgagaCgCUCGUGCUgcuGCGGCGC-GCCg -3' miRNA: 3'- -GCCaca-G-GAGCAUGG---UGUCGCGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 50789 | 0.66 | 0.870114 |
Target: 5'- uCGGcGUCUUCGggACCaugaacagcgcguACAGCGaCUGCg -3' miRNA: 3'- -GCCaCAGGAGCa-UGG-------------UGUCGC-GACGg -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 30586 | 0.66 | 0.844771 |
Target: 5'- gCGGUGgaguaCCUCugcgcgcggcugGCCGCGGCGCgGCg -3' miRNA: 3'- -GCCACa----GGAGca----------UGGUGUCGCGaCGg -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 80153 | 0.66 | 0.839933 |
Target: 5'- gCGGUGUUUggCG-GCUGCGcgaaguugugcGCGCUGCCg -3' miRNA: 3'- -GCCACAGGa-GCaUGGUGU-----------CGCGACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 43531 | 0.66 | 0.870847 |
Target: 5'- gCGGgcuUCCUCGcgGCCaacACGGCGCcGCg -3' miRNA: 3'- -GCCac-AGGAGCa-UGG---UGUCGCGaCGg -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 81784 | 0.66 | 0.839933 |
Target: 5'- gCGGUGcCCgCGgccGCCAgCAGCGCgucGCUu -3' miRNA: 3'- -GCCACaGGaGCa--UGGU-GUCGCGa--CGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 48182 | 0.66 | 0.839933 |
Target: 5'- gCGGcGUCCUgcUGUGCCGC-GCcgGCgGCCa -3' miRNA: 3'- -GCCaCAGGA--GCAUGGUGuCG--CGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 18245 | 0.66 | 0.846369 |
Target: 5'- gGGUGgauccaagauggCCgCG-ACCGCGGCGCgGCUa -3' miRNA: 3'- gCCACa-----------GGaGCaUGGUGUCGCGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 130915 | 0.66 | 0.847959 |
Target: 5'- gCGGUGcCCUCGggGCCAggaccgaggcCGGCGaCguuggGCCc -3' miRNA: 3'- -GCCACaGGAGCa-UGGU----------GUCGC-Ga----CGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 45854 | 0.66 | 0.847959 |
Target: 5'- aCGGccgaggCCUCG-GCCGCGGCGC-GCg -3' miRNA: 3'- -GCCaca---GGAGCaUGGUGUCGCGaCGg -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 15016 | 0.66 | 0.870847 |
Target: 5'- gCGGUGgggCCgcgCGaGCCGCGGC-C-GCCg -3' miRNA: 3'- -GCCACa--GGa--GCaUGGUGUCGcGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 86659 | 0.66 | 0.847959 |
Target: 5'- aCGGUGcucUUCUCGgagcucGCCGC-GCGCUuuuGCCu -3' miRNA: 3'- -GCCAC---AGGAGCa-----UGGUGuCGCGA---CGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 28102 | 0.66 | 0.847958 |
Target: 5'- gCGGUGcCCUCGggGCCAggaccgaggcCGGCGaCguuggGCCc -3' miRNA: 3'- -GCCACaGGAGCa-UGGU----------GUCGC-Ga----CGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 101797 | 0.66 | 0.870847 |
Target: 5'- ---cG-CCUCGUGCaGCAGCGCcacccagGCCg -3' miRNA: 3'- gccaCaGGAGCAUGgUGUCGCGa------CGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 133399 | 0.66 | 0.844771 |
Target: 5'- gCGGUGgaguaCCUCugcgcgcggcugGCCGCGGCGCgGCg -3' miRNA: 3'- -GCCACa----GGAGca----------UGGUGUCGCGaCGg -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 21864 | 0.66 | 0.847959 |
Target: 5'- aGGUGgug-CGgggGCUGCGGCGCgcUGCCg -3' miRNA: 3'- gCCACaggaGCa--UGGUGUCGCG--ACGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 78632 | 0.66 | 0.863422 |
Target: 5'- ---cGUCCUgGUGCUuuuugGCGGCGCgGUCg -3' miRNA: 3'- gccaCAGGAgCAUGG-----UGUCGCGaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 80250 | 0.66 | 0.847958 |
Target: 5'- cCGG-GUCgacggCGUGCCGCAGCaggGCCu -3' miRNA: 3'- -GCCaCAGga---GCAUGGUGUCGcgaCGG- -5' |
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6652 | 3' | -57 | NC_001847.1 | + | 85215 | 0.66 | 0.839933 |
Target: 5'- aCGGcGUCCaaCGUGCgcacgCGCAGCGCcaccgcgGCCg -3' miRNA: 3'- -GCCaCAGGa-GCAUG-----GUGUCGCGa------CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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