miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 3' -57 NC_001847.1 + 80250 0.66 0.847958
Target:  5'- cCGG-GUCgacggCGUGCCGCAGCaggGCCu -3'
miRNA:   3'- -GCCaCAGga---GCAUGGUGUCGcgaCGG- -5'
6652 3' -57 NC_001847.1 + 28102 0.66 0.847958
Target:  5'- gCGGUGcCCUCGggGCCAggaccgaggcCGGCGaCguuggGCCc -3'
miRNA:   3'- -GCCACaGGAGCa-UGGU----------GUCGC-Ga----CGG- -5'
6652 3' -57 NC_001847.1 + 18245 0.66 0.846369
Target:  5'- gGGUGgauccaagauggCCgCG-ACCGCGGCGCgGCUa -3'
miRNA:   3'- gCCACa-----------GGaGCaUGGUGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 133399 0.66 0.844771
Target:  5'- gCGGUGgaguaCCUCugcgcgcggcugGCCGCGGCGCgGCg -3'
miRNA:   3'- -GCCACa----GGAGca----------UGGUGUCGCGaCGg -5'
6652 3' -57 NC_001847.1 + 30586 0.66 0.844771
Target:  5'- gCGGUGgaguaCCUCugcgcgcggcugGCCGCGGCGCgGCg -3'
miRNA:   3'- -GCCACa----GGAGca----------UGGUGUCGCGaCGg -5'
6652 3' -57 NC_001847.1 + 48182 0.66 0.839933
Target:  5'- gCGGcGUCCUgcUGUGCCGC-GCcgGCgGCCa -3'
miRNA:   3'- -GCCaCAGGA--GCAUGGUGuCG--CGaCGG- -5'
6652 3' -57 NC_001847.1 + 85215 0.66 0.839933
Target:  5'- aCGGcGUCCaaCGUGCgcacgCGCAGCGCcaccgcgGCCg -3'
miRNA:   3'- -GCCaCAGGa-GCAUG-----GUGUCGCGa------CGG- -5'
6652 3' -57 NC_001847.1 + 80153 0.66 0.839933
Target:  5'- gCGGUGUUUggCG-GCUGCGcgaaguugugcGCGCUGCCg -3'
miRNA:   3'- -GCCACAGGa-GCaUGGUGU-----------CGCGACGG- -5'
6652 3' -57 NC_001847.1 + 81784 0.66 0.839933
Target:  5'- gCGGUGcCCgCGgccGCCAgCAGCGCgucGCUu -3'
miRNA:   3'- -GCCACaGGaGCa--UGGU-GUCGCGa--CGG- -5'
6652 3' -57 NC_001847.1 + 22041 0.67 0.83172
Target:  5'- ---aGUCUUCGcUGCUGgAGuCGCUGCCg -3'
miRNA:   3'- gccaCAGGAGC-AUGGUgUC-GCGACGG- -5'
6652 3' -57 NC_001847.1 + 85556 0.67 0.83172
Target:  5'- gCGGcaaaUGUCCUCG-GCCgucgucucaACGGCGCcGUCg -3'
miRNA:   3'- -GCC----ACAGGAGCaUGG---------UGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 124854 0.67 0.83172
Target:  5'- ---aGUCUUCGcUGCUGgAGuCGCUGCCg -3'
miRNA:   3'- gccaCAGGAGC-AUGGUgUC-GCGACGG- -5'
6652 3' -57 NC_001847.1 + 50483 0.67 0.823327
Target:  5'- cCGGcgccgGUCCggcCGUAUCuaucaACGGCGCggGCCa -3'
miRNA:   3'- -GCCa----CAGGa--GCAUGG-----UGUCGCGa-CGG- -5'
6652 3' -57 NC_001847.1 + 93401 0.67 0.823327
Target:  5'- cCGGaucacgGUCUcCGUGCagcgCACGGCGCUGUa -3'
miRNA:   3'- -GCCa-----CAGGaGCAUG----GUGUCGCGACGg -5'
6652 3' -57 NC_001847.1 + 129446 0.67 0.823327
Target:  5'- gGGUGUCCaagCGgcUACUugAGCugGCgGCCg -3'
miRNA:   3'- gCCACAGGa--GC--AUGGugUCG--CGaCGG- -5'
6652 3' -57 NC_001847.1 + 55381 0.67 0.823327
Target:  5'- uGGU-UUCUgGUGCCGCugaucgcgcuGGCGCUcGCCa -3'
miRNA:   3'- gCCAcAGGAgCAUGGUG----------UCGCGA-CGG- -5'
6652 3' -57 NC_001847.1 + 3780 0.67 0.814762
Target:  5'- gGGUGUCgCcCGcGCCGCcgaAGCGCacgcgGCCg -3'
miRNA:   3'- gCCACAG-GaGCaUGGUG---UCGCGa----CGG- -5'
6652 3' -57 NC_001847.1 + 106593 0.67 0.814762
Target:  5'- gGGUGUCgCcCGcGCCGCcgaAGCGCacgcgGCCg -3'
miRNA:   3'- gCCACAG-GaGCaUGGUG---UCGCGa----CGG- -5'
6652 3' -57 NC_001847.1 + 130246 0.67 0.814762
Target:  5'- uCGGUGUCgUUCGca--GCGGCGCggggGCCc -3'
miRNA:   3'- -GCCACAG-GAGCauggUGUCGCGa---CGG- -5'
6652 3' -57 NC_001847.1 + 27433 0.67 0.814762
Target:  5'- uCGGUGUCgUUCGca--GCGGCGCggggGCCc -3'
miRNA:   3'- -GCCACAG-GAGCauggUGUCGCGa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.