miRNA display CGI


Results 1 - 20 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 5' -51.5 NC_001847.1 + 49213 0.66 0.980216
Target:  5'- --cGCGCCgggGCCCGCGGGcuuc-GUGUa -3'
miRNA:   3'- gcuCGUGG---CGGGCGCCUauuuuUACG- -5'
6652 5' -51.5 NC_001847.1 + 69390 0.66 0.98236
Target:  5'- -uGGCGCUGCCgGCGGccuu---UGCg -3'
miRNA:   3'- gcUCGUGGCGGgCGCCuauuuuuACG- -5'
6652 5' -51.5 NC_001847.1 + 64030 0.66 0.982154
Target:  5'- aCGGGC-UUGCCCGCGGuucacgccuggGCg -3'
miRNA:   3'- -GCUCGuGGCGGGCGCCuauuuuua---CG- -5'
6652 5' -51.5 NC_001847.1 + 70190 0.66 0.980216
Target:  5'- uCGAGCGCgGCaCgGCGGAccagc-UGCu -3'
miRNA:   3'- -GCUCGUGgCG-GgCGCCUauuuuuACG- -5'
6652 5' -51.5 NC_001847.1 + 52113 0.66 0.980216
Target:  5'- -uGGCcacGCgGCCCGCGGu----AGUGCu -3'
miRNA:   3'- gcUCG---UGgCGGGCGCCuauuuUUACG- -5'
6652 5' -51.5 NC_001847.1 + 118756 0.66 0.980216
Target:  5'- -cGGCugCGCgaGCGGGcGAAcAUGCa -3'
miRNA:   3'- gcUCGugGCGggCGCCUaUUUuUACG- -5'
6652 5' -51.5 NC_001847.1 + 57040 0.66 0.980216
Target:  5'- gGAGCG-CGCCCuGUGGGccGAGGcgGCu -3'
miRNA:   3'- gCUCGUgGCGGG-CGCCUa-UUUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 106663 0.66 0.989229
Target:  5'- -cGGCGCCGCggcguCCGCGGcgcgucGUGCc -3'
miRNA:   3'- gcUCGUGGCG-----GGCGCCuauuuuUACG- -5'
6652 5' -51.5 NC_001847.1 + 7851 0.66 0.980216
Target:  5'- -cGGCACCGCCgGUGGcgcc---UGCa -3'
miRNA:   3'- gcUCGUGGCGGgCGCCuauuuuuACG- -5'
6652 5' -51.5 NC_001847.1 + 76158 0.66 0.979991
Target:  5'- gGAGguUgaagucuUGCCCGCGGAUGccc-UGCg -3'
miRNA:   3'- gCUCguG-------GCGGGCGCCUAUuuuuACG- -5'
6652 5' -51.5 NC_001847.1 + 75429 0.66 0.979765
Target:  5'- cCGAGCGCgauCGCgaCCGCGGAguccug-GCu -3'
miRNA:   3'- -GCUCGUG---GCG--GGCGCCUauuuuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 49907 0.66 0.979765
Target:  5'- uGGGC-CCGgCCGCGGuggcgc-UGCg -3'
miRNA:   3'- gCUCGuGGCgGGCGCCuauuuuuACG- -5'
6652 5' -51.5 NC_001847.1 + 32944 0.66 0.98236
Target:  5'- gCGcGCGgUGCCCGCGGAcAGcGcgGUg -3'
miRNA:   3'- -GCuCGUgGCGGGCGCCUaUUuUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 132592 0.66 0.980216
Target:  5'- aGAGgGCCGCCC-CGGccc-GGcgGCg -3'
miRNA:   3'- gCUCgUGGCGGGcGCCuauuUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 74670 0.66 0.980216
Target:  5'- gGAGCcgGCCGagCCGCGGc-AGGAcgGCg -3'
miRNA:   3'- gCUCG--UGGCg-GGCGCCuaUUUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 3013 0.66 0.981311
Target:  5'- aGcAGCGCCGCCCaauagggGCGGucacgucUGCg -3'
miRNA:   3'- gC-UCGUGGCGGG-------CGCCuauuuuuACG- -5'
6652 5' -51.5 NC_001847.1 + 70877 0.66 0.979765
Target:  5'- gGGGCuguacaaACCGCCUGCGGAccgcuacucgcgGCa -3'
miRNA:   3'- gCUCG-------UGGCGGGCGCCUauuuuua-----CG- -5'
6652 5' -51.5 NC_001847.1 + 29305 0.66 0.981096
Target:  5'- aGAG-GCCGCggCCGCGGAcAAgcgagccgcgagcgcGAGUGCg -3'
miRNA:   3'- gCUCgUGGCG--GGCGCCUaUU---------------UUUACG- -5'
6652 5' -51.5 NC_001847.1 + 35308 0.66 0.980216
Target:  5'- cCGAGCGgCGCgCGCuGGAagcGGGcGUGCg -3'
miRNA:   3'- -GCUCGUgGCGgGCG-CCUa--UUUuUACG- -5'
6652 5' -51.5 NC_001847.1 + 90867 0.66 0.980216
Target:  5'- --cGCGCCGCCgGUGuGGUAGAuc-GCc -3'
miRNA:   3'- gcuCGUGGCGGgCGC-CUAUUUuuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.