miRNA display CGI


Results 1 - 20 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 5' -51.5 NC_001847.1 + 96725 0.75 0.668386
Target:  5'- uCGGGCucCCGCCCcuGCGGcgAAGAAUGa -3'
miRNA:   3'- -GCUCGu-GGCGGG--CGCCuaUUUUUACg -5'
6652 5' -51.5 NC_001847.1 + 11519 0.76 0.604857
Target:  5'- aGGGCGCCGCCC-CGGccGAGuuUGCc -3'
miRNA:   3'- gCUCGUGGCGGGcGCCuaUUUuuACG- -5'
6652 5' -51.5 NC_001847.1 + 10768 0.76 0.604857
Target:  5'- aGAGCugCGCgCGCGGGaAGAGcgGUa -3'
miRNA:   3'- gCUCGugGCGgGCGCCUaUUUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 20039 0.76 0.615441
Target:  5'- gCGGcCGCCGCCCugggcGCGGGcAAAAAUGCg -3'
miRNA:   3'- -GCUcGUGGCGGG-----CGCCUaUUUUUACG- -5'
6652 5' -51.5 NC_001847.1 + 33518 0.76 0.619678
Target:  5'- gCGGGCGCCG-CCGCGGAggcgccggGCg -3'
miRNA:   3'- -GCUCGUGGCgGGCGCCUauuuuua-CG- -5'
6652 5' -51.5 NC_001847.1 + 17591 0.76 0.626038
Target:  5'- aCGGGCGggGCCCGCGGAaAGGGGuUGCg -3'
miRNA:   3'- -GCUCGUggCGGGCGCCUaUUUUU-ACG- -5'
6652 5' -51.5 NC_001847.1 + 77636 0.76 0.626038
Target:  5'- aCGGcGCGCCGCCCGUGGAg------GCc -3'
miRNA:   3'- -GCU-CGUGGCGGGCGCCUauuuuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 134275 0.75 0.657823
Target:  5'- gCGGGcCGCCGCCgCGCG--UGGAGGUGCu -3'
miRNA:   3'- -GCUC-GUGGCGG-GCGCcuAUUUUUACG- -5'
6652 5' -51.5 NC_001847.1 + 75748 0.75 0.668386
Target:  5'- aGAGCAgaaacugcucgcCCGCCgCGCGGGUGAAcAcgGCc -3'
miRNA:   3'- gCUCGU------------GGCGG-GCGCCUAUUU-UuaCG- -5'
6652 5' -51.5 NC_001847.1 + 134047 0.76 0.594296
Target:  5'- -cGGCGCCGCCCGCGGcc---GcgGCg -3'
miRNA:   3'- gcUCGUGGCGGGCGCCuauuuUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 45511 0.77 0.583764
Target:  5'- gCGGGCGCCGCCgccgggcggCGCGGAcGGGGccGUGCc -3'
miRNA:   3'- -GCUCGUGGCGG---------GCGCCUaUUUU--UACG- -5'
6652 5' -51.5 NC_001847.1 + 8081 0.77 0.583764
Target:  5'- gGGGCACCG-CCGCGGcgAGAucgGCg -3'
miRNA:   3'- gCUCGUGGCgGGCGCCuaUUUuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 29466 0.87 0.168789
Target:  5'- cCGaAGCGCCGCCCGCGGccGAGGcgGCa -3'
miRNA:   3'- -GC-UCGUGGCGGGCGCCuaUUUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 4313 0.84 0.254111
Target:  5'- uCGcGCGCCGCCUGCGGGUA---GUGCu -3'
miRNA:   3'- -GCuCGUGGCGGGCGCCUAUuuuUACG- -5'
6652 5' -51.5 NC_001847.1 + 18753 0.84 0.260477
Target:  5'- aGAGCGCCGCcgCCGCGGcUAAGGcgGCg -3'
miRNA:   3'- gCUCGUGGCG--GGCGCCuAUUUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 4541 0.82 0.339205
Target:  5'- -cGGCgGCCGCCCGCGGGUGGcGcgGCg -3'
miRNA:   3'- gcUCG-UGGCGGGCGCCUAUUuUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 126549 0.81 0.347162
Target:  5'- cCGAGCGCCGCCCcugGCGGGgccuGAuuUGCc -3'
miRNA:   3'- -GCUCGUGGCGGG---CGCCUau--UUuuACG- -5'
6652 5' -51.5 NC_001847.1 + 82237 0.8 0.406516
Target:  5'- cCGAGcCGCUGCCCGCGGAccUAGGAcugGCc -3'
miRNA:   3'- -GCUC-GUGGCGGGCGCCU--AUUUUua-CG- -5'
6652 5' -51.5 NC_001847.1 + 83024 0.78 0.501435
Target:  5'- gGGGCGCCgccgGCCCGCGGccgcuAGUGCg -3'
miRNA:   3'- gCUCGUGG----CGGGCGCCuauuuUUACG- -5'
6652 5' -51.5 NC_001847.1 + 57403 0.77 0.542083
Target:  5'- gCGGGUcCCGCUCGCGGAgcUGGAGGUGa -3'
miRNA:   3'- -GCUCGuGGCGGGCGCCU--AUUUUUACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.