miRNA display CGI


Results 1 - 20 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 5' -51.5 NC_001847.1 + 99036 1.12 0.004745
Target:  5'- gCGAGCACCGCCCGCGGAUAAAAAUGCc -3'
miRNA:   3'- -GCUCGUGGCGGGCGCCUAUUUUUACG- -5'
6652 5' -51.5 NC_001847.1 + 53170 0.9 0.107085
Target:  5'- cCGAGCACCGCCCGCGuGAUGAGc--GCg -3'
miRNA:   3'- -GCUCGUGGCGGGCGC-CUAUUUuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 29466 0.87 0.168789
Target:  5'- cCGaAGCGCCGCCCGCGGccGAGGcgGCa -3'
miRNA:   3'- -GC-UCGUGGCGGGCGCCuaUUUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 105646 0.86 0.207695
Target:  5'- cCGaAGCGCCGCCCGCGGccgGAGAgcGUGCc -3'
miRNA:   3'- -GC-UCGUGGCGGGCGCCua-UUUU--UACG- -5'
6652 5' -51.5 NC_001847.1 + 4313 0.84 0.254111
Target:  5'- uCGcGCGCCGCCUGCGGGUA---GUGCu -3'
miRNA:   3'- -GCuCGUGGCGGGCGCCUAUuuuUACG- -5'
6652 5' -51.5 NC_001847.1 + 18753 0.84 0.260477
Target:  5'- aGAGCGCCGCcgCCGCGGcUAAGGcgGCg -3'
miRNA:   3'- gCUCGUGGCG--GGCGCCuAUUUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 102209 0.83 0.301425
Target:  5'- gCGGGCACCGCgCGCGGGUcgucgggcGGGAcgGCg -3'
miRNA:   3'- -GCUCGUGGCGgGCGCCUA--------UUUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 4541 0.82 0.339205
Target:  5'- -cGGCgGCCGCCCGCGGGUGGcGcgGCg -3'
miRNA:   3'- gcUCG-UGGCGGGCGCCUAUUuUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 126549 0.81 0.347162
Target:  5'- cCGAGCGCCGCCCcugGCGGGgccuGAuuUGCc -3'
miRNA:   3'- -GCUCGUGGCGGG---CGCCUau--UUuuACG- -5'
6652 5' -51.5 NC_001847.1 + 23736 0.81 0.347162
Target:  5'- cCGAGCGCCGCCCcugGCGGGgccuGAuuUGCc -3'
miRNA:   3'- -GCUCGUGGCGGG---CGCCUau--UUuuACG- -5'
6652 5' -51.5 NC_001847.1 + 82237 0.8 0.406516
Target:  5'- cCGAGcCGCUGCCCGCGGAccUAGGAcugGCc -3'
miRNA:   3'- -GCUC-GUGGCGGGCGCCU--AUUUUua-CG- -5'
6652 5' -51.5 NC_001847.1 + 69418 0.8 0.424607
Target:  5'- uCGAGCGCCGCCCcgGCGGGcucuGGGAUGa -3'
miRNA:   3'- -GCUCGUGGCGGG--CGCCUau--UUUUACg -5'
6652 5' -51.5 NC_001847.1 + 38200 0.79 0.439421
Target:  5'- aGAGCgccuGCCGCCCGCGGAggcccggGCc -3'
miRNA:   3'- gCUCG----UGGCGGGCGCCUauuuuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 18198 0.78 0.491479
Target:  5'- gGAGCACCGCCaggcaGCGGuacgGGcuGUGCg -3'
miRNA:   3'- gCUCGUGGCGGg----CGCCua--UUuuUACG- -5'
6652 5' -51.5 NC_001847.1 + 83024 0.78 0.501435
Target:  5'- gGGGCGCCgccgGCCCGCGGccgcuAGUGCg -3'
miRNA:   3'- gCUCGUGG----CGGGCGCCuauuuUUACG- -5'
6652 5' -51.5 NC_001847.1 + 99529 0.78 0.521605
Target:  5'- -cAGCGCCGCCgGCGGcgGcguGAUGCg -3'
miRNA:   3'- gcUCGUGGCGGgCGCCuaUuu-UUACG- -5'
6652 5' -51.5 NC_001847.1 + 124865 0.77 0.542083
Target:  5'- gCGAGCGCgCgGCCCGCGGuuuuu-AUGCg -3'
miRNA:   3'- -GCUCGUG-G-CGGGCGCCuauuuuUACG- -5'
6652 5' -51.5 NC_001847.1 + 57403 0.77 0.542083
Target:  5'- gCGGGUcCCGCUCGCGGAgcUGGAGGUGa -3'
miRNA:   3'- -GCUCGuGGCGGGCGCCU--AUUUUUACg -5'
6652 5' -51.5 NC_001847.1 + 46321 0.77 0.543113
Target:  5'- cCGAGCgcagcacgGCCGCCCGCGGGgccgcgucgGCg -3'
miRNA:   3'- -GCUCG--------UGGCGGGCGCCUauuuuua--CG- -5'
6652 5' -51.5 NC_001847.1 + 56193 0.77 0.558654
Target:  5'- gCGAGCGCCaGCCUGCGGGgcacaggGCc -3'
miRNA:   3'- -GCUCGUGG-CGGGCGCCUauuuuuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.