miRNA display CGI


Results 1 - 20 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 5' -51.5 NC_001847.1 + 6 0.66 0.98775
Target:  5'- --cGCGCCGCgCCGCGcGGgcccccUGCg -3'
miRNA:   3'- gcuCGUGGCG-GGCGC-CUauuuuuACG- -5'
6652 5' -51.5 NC_001847.1 + 129 0.69 0.936706
Target:  5'- -cGGCcCCGCCCGCGGGccucgg-GCc -3'
miRNA:   3'- gcUCGuGGCGGGCGCCUauuuuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 505 0.69 0.937708
Target:  5'- cCGcGCGCCaaccccccuGUCCGCGGAgggcAAGUGCc -3'
miRNA:   3'- -GCuCGUGG---------CGGGCGCCUauu-UUUACG- -5'
6652 5' -51.5 NC_001847.1 + 942 0.68 0.951521
Target:  5'- cCGAGCcCgCGCCCGgGGAc--GAcUGCg -3'
miRNA:   3'- -GCUCGuG-GCGGGCgCCUauuUUuACG- -5'
6652 5' -51.5 NC_001847.1 + 1021 0.68 0.962052
Target:  5'- aGGcCGCCGCCCGCGGcgcgccgcaGCa -3'
miRNA:   3'- gCUcGUGGCGGGCGCCuauuuuua-CG- -5'
6652 5' -51.5 NC_001847.1 + 1093 0.73 0.780308
Target:  5'- cCGGGCGCCGCggCCGCGGGcg-----GCg -3'
miRNA:   3'- -GCUCGUGGCG--GGCGCCUauuuuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 1226 0.66 0.98775
Target:  5'- gCGcGCGCCGCCCGCaGGccagGUAcaccgGCc -3'
miRNA:   3'- -GCuCGUGGCGGGCG-CC----UAUuuuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 1420 0.69 0.932597
Target:  5'- aCGGGCACCGCggugCGCGGGcccag--GCg -3'
miRNA:   3'- -GCUCGUGGCGg---GCGCCUauuuuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 2036 0.66 0.984324
Target:  5'- -cGGCGCCGgCCGUGGccacgAUAGGgucuuuGGUGCg -3'
miRNA:   3'- gcUCGUGGCgGGCGCC-----UAUUU------UUACG- -5'
6652 5' -51.5 NC_001847.1 + 2083 0.66 0.984136
Target:  5'- gCGAGCGCCccgcgggGCCCGCGc----GGcgGCg -3'
miRNA:   3'- -GCUCGUGG-------CGGGCGCcuauuUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 2607 0.71 0.851699
Target:  5'- gCGAGC-CCGCCgCGCcGGA----GGUGCu -3'
miRNA:   3'- -GCUCGuGGCGG-GCG-CCUauuuUUACG- -5'
6652 5' -51.5 NC_001847.1 + 2692 0.69 0.934672
Target:  5'- cCGGGU-CCGCCCGCGGcgccccg-GCc -3'
miRNA:   3'- -GCUCGuGGCGGGCGCCuauuuuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 3013 0.66 0.981311
Target:  5'- aGcAGCGCCGCCCaauagggGCGGucacgucUGCg -3'
miRNA:   3'- gC-UCGUGGCGGG-------CGCCuauuuuuACG- -5'
6652 5' -51.5 NC_001847.1 + 3132 0.68 0.951521
Target:  5'- aGAGCACCgggaGCCCgGCGGcgccGGcgGCg -3'
miRNA:   3'- gCUCGUGG----CGGG-CGCCuauuUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 3230 0.71 0.867577
Target:  5'- uCGcGCGCCGCCCGCGcc-----GUGCu -3'
miRNA:   3'- -GCuCGUGGCGGGCGCcuauuuuUACG- -5'
6652 5' -51.5 NC_001847.1 + 3733 0.68 0.951521
Target:  5'- gCGcGCgGCCGCCuCGCGGAUcucgggGCa -3'
miRNA:   3'- -GCuCG-UGGCGG-GCGCCUAuuuuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 3957 0.67 0.975354
Target:  5'- gGGGCGCCGUCUcCGGcgGcGAggGCg -3'
miRNA:   3'- gCUCGUGGCGGGcGCCuaUuUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 3991 0.68 0.961693
Target:  5'- cCGGGCGCgCGgcCCCGCGGGgcgccggGCc -3'
miRNA:   3'- -GCUCGUG-GC--GGGCGCCUauuuuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 4313 0.84 0.254111
Target:  5'- uCGcGCGCCGCCUGCGGGUA---GUGCu -3'
miRNA:   3'- -GCuCGUGGCGGGCGCCUAUuuuUACG- -5'
6652 5' -51.5 NC_001847.1 + 4384 0.7 0.888269
Target:  5'- gCGAGCGCgCGCgCCGCGGcccag---GCg -3'
miRNA:   3'- -GCUCGUG-GCG-GGCGCCuauuuuuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.