miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6653 5' -55.5 NC_001847.1 + 30872 0.66 0.871588
Target:  5'- --aAGUCgaUGGcGUUUGCGCCagucGCCCg -3'
miRNA:   3'- uaaUCGG--ACCuCAAACGCGGcu--CGGG- -5'
6653 5' -55.5 NC_001847.1 + 135033 0.66 0.886157
Target:  5'- --gGGCC-GGGGcgcgggGCGCCGGaCCCa -3'
miRNA:   3'- uaaUCGGaCCUCaaa---CGCGGCUcGGG- -5'
6653 5' -55.5 NC_001847.1 + 26771 0.66 0.886157
Target:  5'- --cGGCCUGGucagUGCGC-GcGCCCu -3'
miRNA:   3'- uaaUCGGACCucaaACGCGgCuCGGG- -5'
6653 5' -55.5 NC_001847.1 + 125730 0.66 0.871588
Target:  5'- -cUGGgCUGGGGUggGCugGCUGGGCUg -3'
miRNA:   3'- uaAUCgGACCUCAaaCG--CGGCUCGGg -5'
6653 5' -55.5 NC_001847.1 + 27935 0.66 0.871588
Target:  5'- --cGGCCgucucGAGUUccuccucGCGuCCGGGCCCa -3'
miRNA:   3'- uaaUCGGac---CUCAAa------CGC-GGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 100847 0.66 0.878988
Target:  5'- --cGGCCaGGGccggaGCGCCG-GCCCg -3'
miRNA:   3'- uaaUCGGaCCUcaaa-CGCGGCuCGGG- -5'
6653 5' -55.5 NC_001847.1 + 21866 0.66 0.876792
Target:  5'- -gUGGUgcGGGGgcUGCggcgcgcugccgagGCCGAGCCCg -3'
miRNA:   3'- uaAUCGgaCCUCaaACG--------------CGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 78976 0.66 0.878988
Target:  5'- --cAGCCUcGGGGgcgUGCucgggcggcuGCUGAGCCa -3'
miRNA:   3'- uaaUCGGA-CCUCaa-ACG----------CGGCUCGGg -5'
6653 5' -55.5 NC_001847.1 + 6549 0.66 0.863962
Target:  5'- -gUGGCCaacaccaaGGuuUUUuCGCCGGGCCCa -3'
miRNA:   3'- uaAUCGGa-------CCucAAAcGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 48928 0.66 0.863187
Target:  5'- -aUAGCCUGGcGGgcgcagGCGCgCGAcuggaccGCCCc -3'
miRNA:   3'- uaAUCGGACC-UCaaa---CGCG-GCU-------CGGG- -5'
6653 5' -55.5 NC_001847.1 + 52675 0.66 0.893091
Target:  5'- --cGGCCccgUGGccg--GgGCCGGGCCCg -3'
miRNA:   3'- uaaUCGG---ACCucaaaCgCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 58211 0.66 0.871588
Target:  5'- --cGGCUguuuguuuuucuUGGAGgcgggacgUGCGCgCGAGCUCg -3'
miRNA:   3'- uaaUCGG------------ACCUCaa------ACGCG-GCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 85734 0.66 0.886157
Target:  5'- --cGGC--GGcAGgcUGCGCgGAGCCCg -3'
miRNA:   3'- uaaUCGgaCC-UCaaACGCGgCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 21963 0.66 0.878988
Target:  5'- --gGGCgCUGGGccgcgGCGCCGGuugccGCCCg -3'
miRNA:   3'- uaaUCG-GACCUcaaa-CGCGGCU-----CGGG- -5'
6653 5' -55.5 NC_001847.1 + 35337 0.66 0.878988
Target:  5'- ---cGCCUGGAGc---UGCCGAGCg- -3'
miRNA:   3'- uaauCGGACCUCaaacGCGGCUCGgg -5'
6653 5' -55.5 NC_001847.1 + 39848 0.66 0.871588
Target:  5'- ---cGCCUGGAG---GCGCCagcGGCCg -3'
miRNA:   3'- uaauCGGACCUCaaaCGCGGc--UCGGg -5'
6653 5' -55.5 NC_001847.1 + 81805 0.66 0.877526
Target:  5'- -gUGGCCUacgcGGAGgcggcggggcGCGCCGucugucGCCCg -3'
miRNA:   3'- uaAUCGGA----CCUCaaa-------CGCGGCu-----CGGG- -5'
6653 5' -55.5 NC_001847.1 + 95513 0.66 0.893091
Target:  5'- --gGGCCUGGcGGgc-GCGCCaggcuuGCCCc -3'
miRNA:   3'- uaaUCGGACC-UCaaaCGCGGcu----CGGG- -5'
6653 5' -55.5 NC_001847.1 + 93544 0.66 0.886157
Target:  5'- ---cGCCcGG-GUUacGUGCCGAGCCg -3'
miRNA:   3'- uaauCGGaCCuCAAa-CGCGGCUCGGg -5'
6653 5' -55.5 NC_001847.1 + 43105 0.66 0.871588
Target:  5'- ---cGCCcGGAG---GCGCCGGcgguGCCCg -3'
miRNA:   3'- uaauCGGaCCUCaaaCGCGGCU----CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.