miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6653 5' -55.5 NC_001847.1 + 40971 0.7 0.686687
Target:  5'- ---uGCCgacGAGcaggUUGCGCCGGGCCg -3'
miRNA:   3'- uaauCGGac-CUCa---AACGCGGCUCGGg -5'
6653 5' -55.5 NC_001847.1 + 35704 0.72 0.540965
Target:  5'- --cGGCCgUGGAGgagGCGCCgGAGCUg -3'
miRNA:   3'- uaaUCGG-ACCUCaaaCGCGG-CUCGGg -5'
6653 5' -55.5 NC_001847.1 + 131807 0.72 0.571795
Target:  5'- -aUGGCCUacccGGAGgccgGCGCCGGcggcagcggcGCCCg -3'
miRNA:   3'- uaAUCGGA----CCUCaaa-CGCGGCU----------CGGG- -5'
6653 5' -55.5 NC_001847.1 + 76389 0.71 0.592582
Target:  5'- --cGGCCUcGGGGgggGCGCCGggGGCCg -3'
miRNA:   3'- uaaUCGGA-CCUCaaaCGCGGC--UCGGg -5'
6653 5' -55.5 NC_001847.1 + 106800 0.71 0.59989
Target:  5'- --gGGCCcGGgcgcgcggccccgcGGg--GCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGaCC--------------UCaaaCGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 74665 0.71 0.623972
Target:  5'- ---cGCCUGGAGcc-G-GCCGAGCCg -3'
miRNA:   3'- uaauCGGACCUCaaaCgCGGCUCGGg -5'
6653 5' -55.5 NC_001847.1 + 53053 0.7 0.644943
Target:  5'- --gAGCCUGGccccgcgcuuGGcccaGaCGCCGAGCCCg -3'
miRNA:   3'- uaaUCGGACC----------UCaaa-C-GCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 100948 0.7 0.680459
Target:  5'- -gUAGCCgccgcgguaacagcGGGGcucgGCGCCGAGCuCCg -3'
miRNA:   3'- uaAUCGGa-------------CCUCaaa-CGCGGCUCG-GG- -5'
6653 5' -55.5 NC_001847.1 + 123148 0.7 0.686687
Target:  5'- --gAGCCaacuaGcGGGUUUGCG-CGAGCCCc -3'
miRNA:   3'- uaaUCGGa----C-CUCAAACGCgGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 77462 0.72 0.530809
Target:  5'- --cGGgCUGGGGcggGCGCCGGGCgCCc -3'
miRNA:   3'- uaaUCgGACCUCaaaCGCGGCUCG-GG- -5'
6653 5' -55.5 NC_001847.1 + 18018 0.73 0.510713
Target:  5'- --gGGCgUGGGGggcgUUGCGCCGguGGUCCc -3'
miRNA:   3'- uaaUCGgACCUCa---AACGCGGC--UCGGG- -5'
6653 5' -55.5 NC_001847.1 + 124560 0.73 0.500784
Target:  5'- --cGGCCcgcgcgcgcgGGGGggccgccgGCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGa---------CCUCaaa-----CGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 99258 0.78 0.255749
Target:  5'- --cAGCCggcgcgGGAGUauauUUGCGCCG-GCCCa -3'
miRNA:   3'- uaaUCGGa-----CCUCA----AACGCGGCuCGGG- -5'
6653 5' -55.5 NC_001847.1 + 103087 0.76 0.332472
Target:  5'- --gAGCCcGGGGgc--CGCCGAGCCCg -3'
miRNA:   3'- uaaUCGGaCCUCaaacGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 113354 0.75 0.418484
Target:  5'- --gGGCCcGGGGacccgcgcccggccgGCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGaCCUCaaa------------CGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 43005 0.74 0.461972
Target:  5'- ---cGCCgGGGGggcGCGCCGGGCCg -3'
miRNA:   3'- uaauCGGaCCUCaaaCGCGGCUCGGg -5'
6653 5' -55.5 NC_001847.1 + 59494 0.74 0.461972
Target:  5'- --cAGCCggcagGGGGU--GCGCCGAGgCCg -3'
miRNA:   3'- uaaUCGGa----CCUCAaaCGCGGCUCgGG- -5'
6653 5' -55.5 NC_001847.1 + 58821 0.73 0.47828
Target:  5'- ---cGCCUGGgccGGUgcgagggucggcacUUGgGCCGGGCCCg -3'
miRNA:   3'- uaauCGGACC---UCA--------------AACgCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 131122 0.73 0.481188
Target:  5'- --cGGCCccgcGaGAGgcggGCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGa---C-CUCaaa-CGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 111265 0.73 0.481188
Target:  5'- ---cGCCgggucGGAGgcgGCGCCGGGCCg -3'
miRNA:   3'- uaauCGGa----CCUCaaaCGCGGCUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.