miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6653 5' -55.5 NC_001847.1 + 99505 1.09 0.002385
Target:  5'- aAUUAGCCUGGAGUUUGCGCCGAGCCCc -3'
miRNA:   3'- -UAAUCGGACCUCAAACGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 99258 0.78 0.255749
Target:  5'- --cAGCCggcgcgGGAGUauauUUGCGCCG-GCCCa -3'
miRNA:   3'- uaaUCGGa-----CCUCA----AACGCGGCuCGGG- -5'
6653 5' -55.5 NC_001847.1 + 103087 0.76 0.332472
Target:  5'- --gAGCCcGGGGgc--CGCCGAGCCCg -3'
miRNA:   3'- uaaUCGGaCCUCaaacGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 274 0.76 0.332472
Target:  5'- --gAGCCcGGGGgc--CGCCGAGCCCg -3'
miRNA:   3'- uaaUCGGaCCUCaaacGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 34175 0.76 0.348116
Target:  5'- ---cGCUcGGAGcucgGCGCCGAGCCCc -3'
miRNA:   3'- uaauCGGaCCUCaaa-CGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 10541 0.75 0.418484
Target:  5'- --gGGCCcGGGGacccgcgcccggccgGCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGaCCUCaaa------------CGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 113354 0.75 0.418484
Target:  5'- --gGGCCcGGGGacccgcgcccggccgGCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGaCCUCaaa------------CGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 65732 0.74 0.443168
Target:  5'- --gAGCCgcaGGAaca-GCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGa--CCUcaaaCGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 59494 0.74 0.461972
Target:  5'- --cAGCCggcagGGGGU--GCGCCGAGgCCg -3'
miRNA:   3'- uaaUCGGa----CCUCAaaCGCGGCUCgGG- -5'
6653 5' -55.5 NC_001847.1 + 43005 0.74 0.461972
Target:  5'- ---cGCCgGGGGggcGCGCCGGGCCg -3'
miRNA:   3'- uaauCGGaCCUCaaaCGCGGCUCGGg -5'
6653 5' -55.5 NC_001847.1 + 58821 0.73 0.47828
Target:  5'- ---cGCCUGGgccGGUgcgagggucggcacUUGgGCCGGGCCCg -3'
miRNA:   3'- uaauCGGACC---UCA--------------AACgCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 111265 0.73 0.481188
Target:  5'- ---cGCCgggucGGAGgcgGCGCCGGGCCg -3'
miRNA:   3'- uaauCGGa----CCUCaaaCGCGGCUCGGg -5'
6653 5' -55.5 NC_001847.1 + 131122 0.73 0.481188
Target:  5'- --cGGCCccgcGaGAGgcggGCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGa---C-CUCaaa-CGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 28309 0.73 0.481188
Target:  5'- --cGGCCccgcGaGAGgcggGCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGa---C-CUCaaa-CGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 8452 0.73 0.481188
Target:  5'- ---cGCCgggucGGAGgcgGCGCCGGGCCg -3'
miRNA:   3'- uaauCGGa----CCUCaaaCGCGGCUCGGg -5'
6653 5' -55.5 NC_001847.1 + 46911 0.73 0.481188
Target:  5'- --aGGCUUcGGGGggcGCGUCGGGCCCg -3'
miRNA:   3'- uaaUCGGA-CCUCaaaCGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 47137 0.73 0.489961
Target:  5'- -gUGGCCcgGGAagGUUUGCgugcucuucugcaGCCGGGCCCc -3'
miRNA:   3'- uaAUCGGa-CCU--CAAACG-------------CGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 14224 0.73 0.500784
Target:  5'- --cGGCCgGGGGcgUGgugagggcaaaCGCCGAGCCCg -3'
miRNA:   3'- uaaUCGGaCCUCaaAC-----------GCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 21747 0.73 0.500784
Target:  5'- --cGGCCcgcgcgcgcgGGGGggccgccgGCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGa---------CCUCaaa-----CGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 124560 0.73 0.500784
Target:  5'- --cGGCCcgcgcgcgcgGGGGggccgccgGCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGa---------CCUCaaa-----CGCGGCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.