miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6653 5' -55.5 NC_001847.1 + 163 0.67 0.839796
Target:  5'- --gGGCC-GGGGUUcUGCGUCuuGGCCCc -3'
miRNA:   3'- uaaUCGGaCCUCAA-ACGCGGc-UCGGG- -5'
6653 5' -55.5 NC_001847.1 + 274 0.76 0.332472
Target:  5'- --gAGCCcGGGGgc--CGCCGAGCCCg -3'
miRNA:   3'- uaaUCGGaCCUCaaacGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 972 0.68 0.79567
Target:  5'- ---cGCCgGGcGUcuaUGCGCCG-GCCCg -3'
miRNA:   3'- uaauCGGaCCuCAa--ACGCGGCuCGGG- -5'
6653 5' -55.5 NC_001847.1 + 1254 0.68 0.777825
Target:  5'- --cGGCCgcagcggcGCGCCGAGCCCc -3'
miRNA:   3'- uaaUCGGaccucaaaCGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 2132 0.69 0.717528
Target:  5'- ---cGCCUcGGGGUcgaaggcgaGCGCCGGGCgCCa -3'
miRNA:   3'- uaauCGGA-CCUCAaa-------CGCGGCUCG-GG- -5'
6653 5' -55.5 NC_001847.1 + 3988 0.72 0.550161
Target:  5'- --gGGCCgGGcgcgcggccccgcGGg--GCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGaCC-------------UCaaaCGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 4277 0.67 0.839796
Target:  5'- --cGGCCUuGAGgg-GCGCCGccCCCg -3'
miRNA:   3'- uaaUCGGAcCUCaaaCGCGGCucGGG- -5'
6653 5' -55.5 NC_001847.1 + 6549 0.66 0.863962
Target:  5'- -gUGGCCaacaccaaGGuuUUUuCGCCGGGCCCa -3'
miRNA:   3'- uaAUCGGa-------CCucAAAcGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 7951 0.66 0.870835
Target:  5'- ---cGCC-GGAGUUcGCGCCaugcggguuuuuaGGGCCUg -3'
miRNA:   3'- uaauCGGaCCUCAAaCGCGG-------------CUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 8452 0.73 0.481188
Target:  5'- ---cGCCgggucGGAGgcgGCGCCGGGCCg -3'
miRNA:   3'- uaauCGGa----CCUCaaaCGCGGCUCGGg -5'
6653 5' -55.5 NC_001847.1 + 10541 0.75 0.418484
Target:  5'- --gGGCCcGGGGacccgcgcccggccgGCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGaCCUCaaa------------CGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 13870 0.72 0.571795
Target:  5'- -gUGGCgaGGGGgg-GCGCCuuuggccggGAGCCCa -3'
miRNA:   3'- uaAUCGgaCCUCaaaCGCGG---------CUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 14224 0.73 0.500784
Target:  5'- --cGGCCgGGGGcgUGgugagggcaaaCGCCGAGCCCg -3'
miRNA:   3'- uaaUCGGaCCUCaaAC-----------GCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 14396 0.69 0.747679
Target:  5'- -gUGGCCUugcaGGAG---GCGaCCGAGCCUc -3'
miRNA:   3'- uaAUCGGA----CCUCaaaCGC-GGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 15474 0.68 0.767264
Target:  5'- --gGGuCCUGGGGg--GcCGCCGuuGCCCu -3'
miRNA:   3'- uaaUC-GGACCUCaaaC-GCGGCu-CGGG- -5'
6653 5' -55.5 NC_001847.1 + 16349 0.69 0.707312
Target:  5'- --cGGCCUGGAGgcgcuggcgGCuGCCGGuGCCg -3'
miRNA:   3'- uaaUCGGACCUCaaa------CG-CGGCU-CGGg -5'
6653 5' -55.5 NC_001847.1 + 18018 0.73 0.510713
Target:  5'- --gGGCgUGGGGggcgUUGCGCCGguGGUCCc -3'
miRNA:   3'- uaaUCGgACCUCa---AACGCGGC--UCGGG- -5'
6653 5' -55.5 NC_001847.1 + 19861 0.66 0.893091
Target:  5'- ---cGCCcGGGG---GCGCCGgcuuAGCCCg -3'
miRNA:   3'- uaauCGGaCCUCaaaCGCGGC----UCGGG- -5'
6653 5' -55.5 NC_001847.1 + 21747 0.73 0.500784
Target:  5'- --cGGCCcgcgcgcgcgGGGGggccgccgGCGCCGGGCCCg -3'
miRNA:   3'- uaaUCGGa---------CCUCaaa-----CGCGGCUCGGG- -5'
6653 5' -55.5 NC_001847.1 + 21866 0.66 0.876792
Target:  5'- -gUGGUgcGGGGgcUGCggcgcgcugccgagGCCGAGCCCg -3'
miRNA:   3'- uaAUCGgaCCUCaaACG--------------CGGCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.