miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 5' -64.2 NC_001847.1 + 134388 0.66 0.503782
Target:  5'- gGCGGCGGGcCGGC-CUcgCCcuagGGGg -3'
miRNA:   3'- -CGCCGCCC-GCCGcGGuaGGacgaCCC- -5'
6657 5' -64.2 NC_001847.1 + 134381 0.68 0.399674
Target:  5'- uCGGCGaGGCGGUGCaggCCagUGgUGGGc -3'
miRNA:   3'- cGCCGC-CCGCCGCGguaGG--ACgACCC- -5'
6657 5' -64.2 NC_001847.1 + 134238 0.71 0.265691
Target:  5'- cCGGCGGGCGGCGgCCGgcggCCgcgGC-GGc -3'
miRNA:   3'- cGCCGCCCGCCGC-GGUa---GGa--CGaCCc -5'
6657 5' -64.2 NC_001847.1 + 134127 0.69 0.383692
Target:  5'- cGCGccGCGGGCGGCGg---CCUGgUGGa -3'
miRNA:   3'- -CGC--CGCCCGCCGCgguaGGACgACCc -5'
6657 5' -64.2 NC_001847.1 + 134042 0.71 0.263897
Target:  5'- cGCGGCGGcgccgcccgcggccGCGGCGCCcggCgUGgaCUGGGa -3'
miRNA:   3'- -CGCCGCC--------------CGCCGCGGua-GgAC--GACCC- -5'
6657 5' -64.2 NC_001847.1 + 133922 0.67 0.441431
Target:  5'- gGCcuGCGGGCGGCGCgCG-CUggaGCUGGc -3'
miRNA:   3'- -CGc-CGCCCGCCGCG-GUaGGa--CGACCc -5'
6657 5' -64.2 NC_001847.1 + 133853 0.71 0.265092
Target:  5'- -gGGCGaGGCGGCcagccaccgcgccGCCAaCC-GCUGGGg -3'
miRNA:   3'- cgCCGC-CCGCCG-------------CGGUaGGaCGACCC- -5'
6657 5' -64.2 NC_001847.1 + 133728 0.66 0.494629
Target:  5'- cUGGCGGGCgcGGgGCCGcgugCCUGCcuguguugucGGGg -3'
miRNA:   3'- cGCCGCCCG--CCgCGGUa---GGACGa---------CCC- -5'
6657 5' -64.2 NC_001847.1 + 133567 0.69 0.36814
Target:  5'- aGCGGCGcgcuGGCGcGCGCCG---UGCUGGc -3'
miRNA:   3'- -CGCCGC----CCGC-CGCGGUaggACGACCc -5'
6657 5' -64.2 NC_001847.1 + 133428 0.69 0.383692
Target:  5'- cGCGGCGcGGCGGCGgCugAUCgUGCUc-- -3'
miRNA:   3'- -CGCCGC-CCGCCGCgG--UAGgACGAccc -5'
6657 5' -64.2 NC_001847.1 + 133237 0.71 0.290549
Target:  5'- cGCGGCGGGCucucgcacGCGCUcgCggcGCUGGGc -3'
miRNA:   3'- -CGCCGCCCGc-------CGCGGuaGga-CGACCC- -5'
6657 5' -64.2 NC_001847.1 + 133178 0.68 0.424428
Target:  5'- -aGGCGcuGGCGGCGCCGcCCgGCgaGGa -3'
miRNA:   3'- cgCCGC--CCGCCGCGGUaGGaCGa-CCc -5'
6657 5' -64.2 NC_001847.1 + 132805 0.74 0.165222
Target:  5'- cCGGCGcGGCGGgagccgccgcugccCGCCcgCgUGCUGGGg -3'
miRNA:   3'- cGCCGC-CCGCC--------------GCGGuaGgACGACCC- -5'
6657 5' -64.2 NC_001847.1 + 132702 0.68 0.399674
Target:  5'- aCGGCGaGGCGGCggcccuGCCggCCgccGCgGGGg -3'
miRNA:   3'- cGCCGC-CCGCCG------CGGuaGGa--CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 132673 0.75 0.147424
Target:  5'- gGCGGCGGG-GGCGCCGccgCCcGCUcgaucGGGa -3'
miRNA:   3'- -CGCCGCCCgCCGCGGUa--GGaCGA-----CCC- -5'
6657 5' -64.2 NC_001847.1 + 132610 0.67 0.476554
Target:  5'- gGCGGCGGGa-GCGCCG-CCggGUccgaGGGa -3'
miRNA:   3'- -CGCCGCCCgcCGCGGUaGGa-CGa---CCC- -5'
6657 5' -64.2 NC_001847.1 + 132378 0.69 0.338356
Target:  5'- cCGGCGGGggcgcCGGCGCCGgcgCCgccGCgccGGGc -3'
miRNA:   3'- cGCCGCCC-----GCCGCGGUa--GGa--CGa--CCC- -5'
6657 5' -64.2 NC_001847.1 + 132269 0.71 0.277898
Target:  5'- cGCGGCGcGGCGGCccGCgCGUCg-GcCUGGGc -3'
miRNA:   3'- -CGCCGC-CCGCCG--CG-GUAGgaC-GACCC- -5'
6657 5' -64.2 NC_001847.1 + 132040 0.69 0.338356
Target:  5'- cGCGGCGGGCcgcGGCcuGCCGgccgcggCCUGCgcgccGGa -3'
miRNA:   3'- -CGCCGCCCG---CCG--CGGUa------GGACGa----CCc -5'
6657 5' -64.2 NC_001847.1 + 131438 0.66 0.522303
Target:  5'- cGCGGCGGccGCGGgGCCcgcggCCgUGUucgugccggagaUGGGg -3'
miRNA:   3'- -CGCCGCC--CGCCgCGGua---GG-ACG------------ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.