miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 5' -64.2 NC_001847.1 + 10596 0.81 0.058219
Target:  5'- cGCGcGCGGGcCGGCGCCGgcccgcgcCCUGCUGGc -3'
miRNA:   3'- -CGC-CGCCC-GCCGCGGUa-------GGACGACCc -5'
6657 5' -64.2 NC_001847.1 + 105701 0.74 0.183171
Target:  5'- gGCcGCGGGCGGCGCCAcgCCccagcgcucGCUGGc -3'
miRNA:   3'- -CGcCGCCCGCCGCGGUa-GGa--------CGACCc -5'
6657 5' -64.2 NC_001847.1 + 42726 0.73 0.187585
Target:  5'- cGCGGCGGGCGGcCGCgCGggCgGCgGGGc -3'
miRNA:   3'- -CGCCGCCCGCC-GCG-GUagGaCGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 96631 0.66 0.550556
Target:  5'- cGCGG-GGGcCGGCGgguacgCGUCgUGCgcgGGGg -3'
miRNA:   3'- -CGCCgCCC-GCCGCg-----GUAGgACGa--CCC- -5'
6657 5' -64.2 NC_001847.1 + 95705 0.76 0.12111
Target:  5'- cGCGGgGGGCGGCGCgGgCCgcucugGCgcgGGGg -3'
miRNA:   3'- -CGCCgCCCGCCGCGgUaGGa-----CGa--CCC- -5'
6657 5' -64.2 NC_001847.1 + 95759 0.76 0.12111
Target:  5'- cGCGGgGGGCGGCGCgGgCCgcucugGCgcgGGGg -3'
miRNA:   3'- -CGCCgCCCGCCGCGgUaGGa-----CGa--CCC- -5'
6657 5' -64.2 NC_001847.1 + 3947 0.76 0.130423
Target:  5'- cGCGGCGGGgggGGCGCCGUCUccgGCggcgaGGGc -3'
miRNA:   3'- -CGCCGCCCg--CCGCGGUAGGa--CGa----CCC- -5'
6657 5' -64.2 NC_001847.1 + 3807 0.76 0.130423
Target:  5'- cGCGGcCGGGCGGCGgCGgcgCgCUGCcGGGc -3'
miRNA:   3'- -CGCC-GCCCGCCGCgGUa--G-GACGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 95517 0.75 0.154773
Target:  5'- cUGGCGGGC-GCGCCAggcuugCCccugggGCUGGGg -3'
miRNA:   3'- cGCCGCCCGcCGCGGUa-----GGa-----CGACCC- -5'
6657 5' -64.2 NC_001847.1 + 44307 0.74 0.178848
Target:  5'- cGCGGCGGGCcaGCGCCAgagcggugCCcGCcGGGc -3'
miRNA:   3'- -CGCCGCCCGc-CGCGGUa-------GGaCGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 78046 0.75 0.158956
Target:  5'- cGCGGCGGcGCGGCGguCCAgcgcagcgcuggccgCCgcGCUGGGg -3'
miRNA:   3'- -CGCCGCC-CGCCGC--GGUa--------------GGa-CGACCC- -5'
6657 5' -64.2 NC_001847.1 + 132673 0.75 0.147424
Target:  5'- gGCGGCGGG-GGCGCCGccgCCcGCUcgaucGGGa -3'
miRNA:   3'- -CGCCGCCCgCCGCGGUa--GGaCGA-----CCC- -5'
6657 5' -64.2 NC_001847.1 + 22516 0.77 0.109652
Target:  5'- gGCGGCGGGCcGgGCCggUCUGCcGGGa -3'
miRNA:   3'- -CGCCGCCCGcCgCGGuaGGACGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 29992 0.74 0.165222
Target:  5'- cCGGCGcGGCGGgagccgccgcugccCGCCcgCgUGCUGGGg -3'
miRNA:   3'- cGCCGC-CCGCC--------------GCGGuaGgACGACCC- -5'
6657 5' -64.2 NC_001847.1 + 88395 0.77 0.109652
Target:  5'- cGCGGCGGGCGggcGCGCCGUCggGUaccagGGGg -3'
miRNA:   3'- -CGCCGCCCGC---CGCGGUAGgaCGa----CCC- -5'
6657 5' -64.2 NC_001847.1 + 70265 0.75 0.146349
Target:  5'- cGCGGCGuugcucucGGCGcGCGCCugcgaaaaguaccaGUCCUGCaGGGg -3'
miRNA:   3'- -CGCCGC--------CCGC-CGCGG--------------UAGGACGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 86768 0.74 0.170475
Target:  5'- cCGGCccGGCGGCGCCAcggUCgugacgCUGCUGGGc -3'
miRNA:   3'- cGCCGc-CCGCCGCGGU---AG------GACGACCC- -5'
6657 5' -64.2 NC_001847.1 + 88251 0.74 0.183171
Target:  5'- cGCGGCgcggggcgccGGGCGgggacggggggaGCGCUucgCCUGCUGGGc -3'
miRNA:   3'- -CGCCG----------CCCGC------------CGCGGua-GGACGACCC- -5'
6657 5' -64.2 NC_001847.1 + 95651 0.76 0.12111
Target:  5'- cGCGGgGGGCGGCGCgGgCCgcucugGCgcgGGGg -3'
miRNA:   3'- -CGCCgCCCGCCGCGgUaGGa-----CGa--CCC- -5'
6657 5' -64.2 NC_001847.1 + 110817 0.76 0.12111
Target:  5'- cGCGGCGuGGC-GCGCCA-CCgcucGCUGGGc -3'
miRNA:   3'- -CGCCGC-CCGcCGCGGUaGGa---CGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.