miRNA display CGI


Results 21 - 40 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 5' -64.2 NC_001847.1 + 130524 0.66 0.531663
Target:  5'- cCGGCGGGCcgcccGCGCCGagcuggCCgaGCUGuGGc -3'
miRNA:   3'- cGCCGCCCGc----CGCGGUa-----GGa-CGAC-CC- -5'
6657 5' -64.2 NC_001847.1 + 34113 0.66 0.531663
Target:  5'- gGCGGCGGagccuGCGGCGCCugCCgcGgUGGc -3'
miRNA:   3'- -CGCCGCC-----CGCCGCGGuaGGa-CgACCc -5'
6657 5' -64.2 NC_001847.1 + 60547 0.66 0.531663
Target:  5'- aUGGCGuuGGCcaCGCCGUCCUGCaGGc -3'
miRNA:   3'- cGCCGC--CCGccGCGGUAGGACGaCCc -5'
6657 5' -64.2 NC_001847.1 + 27711 0.66 0.531663
Target:  5'- cCGGCGGGCcgcccGCGCCGagcuggCCgaGCUGuGGc -3'
miRNA:   3'- cGCCGCCCGc----CGCGGUa-----GGa-CGAC-CC- -5'
6657 5' -64.2 NC_001847.1 + 59395 0.66 0.530724
Target:  5'- cGCGGCGGGCGagcaguuucuGCucuaucgGCCAUCCacgGCgGcGGc -3'
miRNA:   3'- -CGCCGCCCGC----------CG-------CGGUAGGa--CGaC-CC- -5'
6657 5' -64.2 NC_001847.1 + 29503 0.66 0.528848
Target:  5'- gGCcGCGGGCGGCGCUucggCCgcagaGCUcgcccgcgcggcgcGGGc -3'
miRNA:   3'- -CGcCGCCCGCCGCGGua--GGa----CGA--------------CCC- -5'
6657 5' -64.2 NC_001847.1 + 37021 0.66 0.526039
Target:  5'- cCGuGCGGaGCggGGCGCCGggcucgcacucuagCCUggGCUGGGg -3'
miRNA:   3'- cGC-CGCC-CG--CCGCGGUa-------------GGA--CGACCC- -5'
6657 5' -64.2 NC_001847.1 + 50811 0.66 0.526039
Target:  5'- uGCGGCcgguacgguuuuacgGGGgGGCGCUG-CCcGCgccgGGGg -3'
miRNA:   3'- -CGCCG---------------CCCgCCGCGGUaGGaCGa---CCC- -5'
6657 5' -64.2 NC_001847.1 + 73186 0.66 0.522303
Target:  5'- cCGGCGGGCacGGCGCgCGggCagGCUGcGGu -3'
miRNA:   3'- cGCCGCCCG--CCGCG-GUagGa-CGAC-CC- -5'
6657 5' -64.2 NC_001847.1 + 34808 0.66 0.522303
Target:  5'- cGCGGCcgcuGGcGCGGCagGCCGaCCgggcGCUGGa -3'
miRNA:   3'- -CGCCG----CC-CGCCG--CGGUaGGa---CGACCc -5'
6657 5' -64.2 NC_001847.1 + 49707 0.66 0.522303
Target:  5'- aCGGgGGcGCGGCGCC--CgUGCaagUGGGc -3'
miRNA:   3'- cGCCgCC-CGCCGCGGuaGgACG---ACCC- -5'
6657 5' -64.2 NC_001847.1 + 131438 0.66 0.522303
Target:  5'- cGCGGCGGccGCGGgGCCcgcggCCgUGUucgugccggagaUGGGg -3'
miRNA:   3'- -CGCCGCC--CGCCgCGGua---GG-ACG------------ACCC- -5'
6657 5' -64.2 NC_001847.1 + 116161 0.66 0.522303
Target:  5'- cGCuGGCGGccGCgGGCGCCGcggCCgcGCUGGu -3'
miRNA:   3'- -CG-CCGCC--CG-CCGCGGUa--GGa-CGACCc -5'
6657 5' -64.2 NC_001847.1 + 104542 0.66 0.522303
Target:  5'- cGCGGCGGcccCGGgGCCgcuacgcggcgGUCCUcCUGGa -3'
miRNA:   3'- -CGCCGCCc--GCCgCGG-----------UAGGAcGACCc -5'
6657 5' -64.2 NC_001847.1 + 28625 0.66 0.522303
Target:  5'- cGCGGCGGccGCGGgGCCcgcggCCgUGUucgugccggagaUGGGg -3'
miRNA:   3'- -CGCCGCC--CGCCgCGGua---GG-ACG------------ACCC- -5'
6657 5' -64.2 NC_001847.1 + 45455 0.66 0.522303
Target:  5'- cGCGGCGcGCGcaaauagcgcGCGCCAgucgcgCgUGCUcGGGa -3'
miRNA:   3'- -CGCCGCcCGC----------CGCGGUa-----GgACGA-CCC- -5'
6657 5' -64.2 NC_001847.1 + 42964 0.66 0.522303
Target:  5'- cGgGGgGGGCGGgcCGCCggCCgGCccGGGu -3'
miRNA:   3'- -CgCCgCCCGCC--GCGGuaGGaCGa-CCC- -5'
6657 5' -64.2 NC_001847.1 + 101848 0.66 0.521371
Target:  5'- uGCGcacaaacGCGGG-GGCGUCGUCCUcGCcaaucaGGGg -3'
miRNA:   3'- -CGC-------CGCCCgCCGCGGUAGGA-CGa-----CCC- -5'
6657 5' -64.2 NC_001847.1 + 36116 0.66 0.520439
Target:  5'- --cGCGGGCGGUGCUcgCCgcccgaggcagcGCUGuGGu -3'
miRNA:   3'- cgcCGCCCGCCGCGGuaGGa-----------CGAC-CC- -5'
6657 5' -64.2 NC_001847.1 + 34377 0.66 0.516718
Target:  5'- uGCGGCcgaaacaacGGCGGcCGCCG-CCgcggcagacgcggcGCUGGGg -3'
miRNA:   3'- -CGCCGc--------CCGCC-GCGGUaGGa-------------CGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.