miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 5' -64.2 NC_001847.1 + 47061 0.66 0.550556
Target:  5'- cGCGGcCGGcGCGGUcgaugccaGCCAagUCCaGCaGGGc -3'
miRNA:   3'- -CGCC-GCC-CGCCG--------CGGU--AGGaCGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 96631 0.66 0.550556
Target:  5'- cGCGG-GGGcCGGCGgguacgCGUCgUGCgcgGGGg -3'
miRNA:   3'- -CGCCgCCC-GCCGCg-----GUAGgACGa--CCC- -5'
6657 5' -64.2 NC_001847.1 + 77931 0.66 0.550556
Target:  5'- cCGGCGGGCGGCuguaGCaaacgCC-GCcGGGc -3'
miRNA:   3'- cGCCGCCCGCCG----CGgua--GGaCGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 63203 0.66 0.544865
Target:  5'- aCGuGCGGcGCGGCGCCGUuuacgcgugcgcgcgCCgcgcGCcGGGu -3'
miRNA:   3'- cGC-CGCC-CGCCGCGGUA---------------GGa---CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 73031 0.66 0.541082
Target:  5'- cGCGGCa-GCGGcCGCggaCAaCCUGCUGGc -3'
miRNA:   3'- -CGCCGccCGCC-GCG---GUaGGACGACCc -5'
6657 5' -64.2 NC_001847.1 + 18526 0.66 0.541082
Target:  5'- cGCuGCGGGCGcGcCGCCGUCC-GCg--- -3'
miRNA:   3'- -CGcCGCCCGC-C-GCGGUAGGaCGaccc -5'
6657 5' -64.2 NC_001847.1 + 33577 0.66 0.541082
Target:  5'- gGCGGcCGuGcGCGGUGCCgacgacGUCCUgcgccaGCUGGa -3'
miRNA:   3'- -CGCC-GC-C-CGCCGCGG------UAGGA------CGACCc -5'
6657 5' -64.2 NC_001847.1 + 15127 0.66 0.541082
Target:  5'- aCGGC-GGCGGUGCUggCCUuGCUacugcgcgucGGGg -3'
miRNA:   3'- cGCCGcCCGCCGCGGuaGGA-CGA----------CCC- -5'
6657 5' -64.2 NC_001847.1 + 67182 0.66 0.541082
Target:  5'- uCGGCGGcgacccccugccGCGGCuguguGCCGUCgUGCUGcgcGGa -3'
miRNA:   3'- cGCCGCC------------CGCCG-----CGGUAGgACGAC---CC- -5'
6657 5' -64.2 NC_001847.1 + 100641 0.66 0.541082
Target:  5'- cUGGCu-GCGGCGCCAgggccgCgCUGCUGcGGc -3'
miRNA:   3'- cGCCGccCGCCGCGGUa-----G-GACGAC-CC- -5'
6657 5' -64.2 NC_001847.1 + 80855 0.66 0.541082
Target:  5'- gGCGGCGGcGCGcGUcgagGCCGUCCgGCa--- -3'
miRNA:   3'- -CGCCGCC-CGC-CG----CGGUAGGaCGaccc -5'
6657 5' -64.2 NC_001847.1 + 107645 0.66 0.541082
Target:  5'- gGCgGGUGGGuCGGCcgGCCGUCaaaacGCaGGGg -3'
miRNA:   3'- -CG-CCGCCC-GCCG--CGGUAGga---CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 14334 0.66 0.541082
Target:  5'- aGCGGCGGGCagagaaGGgGUg--CCUGCUGc- -3'
miRNA:   3'- -CGCCGCCCG------CCgCGguaGGACGACcc -5'
6657 5' -64.2 NC_001847.1 + 15518 0.66 0.541082
Target:  5'- uGCGGCucGGCGGgaGCCGcgggCUGCUGGc -3'
miRNA:   3'- -CGCCGc-CCGCCg-CGGUag--GACGACCc -5'
6657 5' -64.2 NC_001847.1 + 4832 0.66 0.541082
Target:  5'- gGCgGGUGGGuCGGCcgGCCGUCaaaacGCaGGGg -3'
miRNA:   3'- -CG-CCGCCC-GCCG--CGGUAGga---CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 89641 0.66 0.541082
Target:  5'- cCGGC-GGCGGCGCCcgCCcc--GGGc -3'
miRNA:   3'- cGCCGcCCGCCGCGGuaGGacgaCCC- -5'
6657 5' -64.2 NC_001847.1 + 2107 0.66 0.540137
Target:  5'- gGCGGCGGGCcGCgaucucgGCCAgcgCCU-CgGGGu -3'
miRNA:   3'- -CGCCGCCCGcCG-------CGGUa--GGAcGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 104920 0.66 0.540137
Target:  5'- gGCGGCGGGCcGCgaucucgGCCAgcgCCU-CgGGGu -3'
miRNA:   3'- -CGCCGCCCGcCG-------CGGUa--GGAcGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 37705 0.66 0.535423
Target:  5'- uGCGGCGcGCGGCugcgcagcaacaagaGCCugcagauguUCCUGCUGu- -3'
miRNA:   3'- -CGCCGCcCGCCG---------------CGGu--------AGGACGACcc -5'
6657 5' -64.2 NC_001847.1 + 130524 0.66 0.531663
Target:  5'- cCGGCGGGCcgcccGCGCCGagcuggCCgaGCUGuGGc -3'
miRNA:   3'- cGCCGCCCGc----CGCGGUa-----GGa-CGAC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.