Results 1 - 20 of 758 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6659 | 5' | -60 | NC_001847.1 | + | 21317 | 0.66 | 0.700706 |
Target: 5'- ---cGcGCCACGCGGGgUGCCAag-GCc -3' miRNA: 3'- aguaC-CGGUGCGUCCgGCGGUgcaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 18590 | 0.66 | 0.690792 |
Target: 5'- aCGUGcGCCAUuaGCGcGCCGuCCGCG-GCg -3' miRNA: 3'- aGUAC-CGGUG--CGUcCGGC-GGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 115577 | 0.66 | 0.679834 |
Target: 5'- ---gGGCCGCggcgaucGCGGGCguCGaUCGCGUGCg -3' miRNA: 3'- aguaCCGGUG-------CGUCCG--GC-GGUGCACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 26388 | 0.66 | 0.679834 |
Target: 5'- gUCcgGcGCCcaGCGCGGcaggaacGCCGUCGCGUcGCa -3' miRNA: 3'- -AGuaC-CGG--UGCGUC-------CGGCGGUGCA-CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 14141 | 0.66 | 0.690792 |
Target: 5'- gCggGGcCCGCGCcuGGGCgGCCGCuaggGCg -3' miRNA: 3'- aGuaCC-GGUGCG--UCCGgCGGUGca--CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 2167 | 0.66 | 0.699717 |
Target: 5'- ---aGGUCuCGCAGcgcccgcGCCGCCugggcgGCGUGCg -3' miRNA: 3'- aguaCCGGuGCGUC-------CGGCGG------UGCACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 120951 | 0.66 | 0.730075 |
Target: 5'- -gGUGGCUgAUGUGGGCggacccagCGCCGCGUaaGCg -3' miRNA: 3'- agUACCGG-UGCGUCCG--------GCGGUGCA--CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 30190 | 0.66 | 0.680832 |
Target: 5'- --cUGGCCgACGCGGuGCgCGgCGCGcGCg -3' miRNA: 3'- aguACCGG-UGCGUC-CG-GCgGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 53236 | 0.66 | 0.680832 |
Target: 5'- cUCAUGG-UGCGCuGGCUGCgGCGccGCc -3' miRNA: 3'- -AGUACCgGUGCGuCCGGCGgUGCa-CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 53003 | 0.66 | 0.690792 |
Target: 5'- gCAUGGCgGagccgacaGCGgcGGCCGCUGCGcGCu -3' miRNA: 3'- aGUACCGgUg-------CGU--CCGGCGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 14442 | 0.66 | 0.690792 |
Target: 5'- --uUGGCgccgaGCGCGcGGCCGCgCugcucgGCGUGCg -3' miRNA: 3'- aguACCGg----UGCGU-CCGGCG-G------UGCACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 25683 | 0.66 | 0.677836 |
Target: 5'- cUCAUGcgauccacgaccucGCCgACGUAaGCCGCCAC-UGCg -3' miRNA: 3'- -AGUAC--------------CGG-UGCGUcCGGCGGUGcACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 34379 | 0.66 | 0.680832 |
Target: 5'- ---cGGCCGaaacaacgGCGGccGCCGCCGCG-GCa -3' miRNA: 3'- aguaCCGGUg-------CGUC--CGGCGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 19060 | 0.66 | 0.690792 |
Target: 5'- gUCAUGGUCA-GUAGcGCCGUgCGaaaGUGCg -3' miRNA: 3'- -AGUACCGGUgCGUC-CGGCG-GUg--CACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 104453 | 0.66 | 0.700706 |
Target: 5'- ---cGG-CGCGCAGGUa--CACGUGCg -3' miRNA: 3'- aguaCCgGUGCGUCCGgcgGUGCACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 41512 | 0.66 | 0.679834 |
Target: 5'- aUCAUGG-CGCGaaaGGGCCgugggucuaugccGCCGCGgGCc -3' miRNA: 3'- -AGUACCgGUGCg--UCCGG-------------CGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 29601 | 0.66 | 0.690792 |
Target: 5'- ---cGGCCuuuGCGCcccacuucGCCGCCGcCGUGCu -3' miRNA: 3'- aguaCCGG---UGCGuc------CGGCGGU-GCACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 49285 | 0.66 | 0.690792 |
Target: 5'- ----cGCCGCGCGGaGCCGCgACucgcugcuggcgGUGCu -3' miRNA: 3'- aguacCGGUGCGUC-CGGCGgUG------------CACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 54578 | 0.66 | 0.680832 |
Target: 5'- ---cGGCCcCGCGGGCUggGCgGCGcugGCg -3' miRNA: 3'- aguaCCGGuGCGUCCGG--CGgUGCa--CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 90232 | 0.66 | 0.690792 |
Target: 5'- aCAcGGUCGCGgccGCCGCCGCG-GCc -3' miRNA: 3'- aGUaCCGGUGCgucCGGCGGUGCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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