miRNA display CGI


Results 1 - 20 of 758 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6659 5' -60 NC_001847.1 + 54578 0.66 0.680832
Target:  5'- ---cGGCCcCGCGGGCUggGCgGCGcugGCg -3'
miRNA:   3'- aguaCCGGuGCGUCCGG--CGgUGCa--CG- -5'
6659 5' -60 NC_001847.1 + 34100 0.66 0.680832
Target:  5'- cCGUGGCuCGCGCGgcGGCggaGCCuGCG-GCg -3'
miRNA:   3'- aGUACCG-GUGCGU--CCGg--CGG-UGCaCG- -5'
6659 5' -60 NC_001847.1 + 49285 0.66 0.690792
Target:  5'- ----cGCCGCGCGGaGCCGCgACucgcugcuggcgGUGCu -3'
miRNA:   3'- aguacCGGUGCGUC-CGGCGgUG------------CACG- -5'
6659 5' -60 NC_001847.1 + 18590 0.66 0.690792
Target:  5'- aCGUGcGCCAUuaGCGcGCCGuCCGCG-GCg -3'
miRNA:   3'- aGUAC-CGGUG--CGUcCGGC-GGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 53236 0.66 0.680832
Target:  5'- cUCAUGG-UGCGCuGGCUGCgGCGccGCc -3'
miRNA:   3'- -AGUACCgGUGCGuCCGGCGgUGCa-CG- -5'
6659 5' -60 NC_001847.1 + 30190 0.66 0.680832
Target:  5'- --cUGGCCgACGCGGuGCgCGgCGCGcGCg -3'
miRNA:   3'- aguACCGG-UGCGUC-CG-GCgGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 34379 0.66 0.680832
Target:  5'- ---cGGCCGaaacaacgGCGGccGCCGCCGCG-GCa -3'
miRNA:   3'- aguaCCGGUg-------CGUC--CGGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 19060 0.66 0.690792
Target:  5'- gUCAUGGUCA-GUAGcGCCGUgCGaaaGUGCg -3'
miRNA:   3'- -AGUACCGGUgCGUC-CGGCG-GUg--CACG- -5'
6659 5' -60 NC_001847.1 + 25683 0.66 0.677836
Target:  5'- cUCAUGcgauccacgaccucGCCgACGUAaGCCGCCAC-UGCg -3'
miRNA:   3'- -AGUAC--------------CGG-UGCGUcCGGCGGUGcACG- -5'
6659 5' -60 NC_001847.1 + 29601 0.66 0.690792
Target:  5'- ---cGGCCuuuGCGCcccacuucGCCGCCGcCGUGCu -3'
miRNA:   3'- aguaCCGG---UGCGuc------CGGCGGU-GCACG- -5'
6659 5' -60 NC_001847.1 + 120951 0.66 0.730075
Target:  5'- -gGUGGCUgAUGUGGGCggacccagCGCCGCGUaaGCg -3'
miRNA:   3'- agUACCGG-UGCGUCCG--------GCGGUGCA--CG- -5'
6659 5' -60 NC_001847.1 + 21317 0.66 0.700706
Target:  5'- ---cGcGCCACGCGGGgUGCCAag-GCc -3'
miRNA:   3'- aguaC-CGGUGCGUCCgGCGGUgcaCG- -5'
6659 5' -60 NC_001847.1 + 53003 0.66 0.690792
Target:  5'- gCAUGGCgGagccgacaGCGgcGGCCGCUGCGcGCu -3'
miRNA:   3'- aGUACCGgUg-------CGU--CCGGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 90232 0.66 0.690792
Target:  5'- aCAcGGUCGCGgccGCCGCCGCG-GCc -3'
miRNA:   3'- aGUaCCGGUGCgucCGGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 14141 0.66 0.690792
Target:  5'- gCggGGcCCGCGCcuGGGCgGCCGCuaggGCg -3'
miRNA:   3'- aGuaCC-GGUGCG--UCCGgCGGUGca--CG- -5'
6659 5' -60 NC_001847.1 + 115577 0.66 0.679834
Target:  5'- ---gGGCCGCggcgaucGCGGGCguCGaUCGCGUGCg -3'
miRNA:   3'- aguaCCGGUG-------CGUCCG--GC-GGUGCACG- -5'
6659 5' -60 NC_001847.1 + 26388 0.66 0.679834
Target:  5'- gUCcgGcGCCcaGCGCGGcaggaacGCCGUCGCGUcGCa -3'
miRNA:   3'- -AGuaC-CGG--UGCGUC-------CGGCGGUGCA-CG- -5'
6659 5' -60 NC_001847.1 + 41512 0.66 0.679834
Target:  5'- aUCAUGG-CGCGaaaGGGCCgugggucuaugccGCCGCGgGCc -3'
miRNA:   3'- -AGUACCgGUGCg--UCCGG-------------CGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 104453 0.66 0.700706
Target:  5'- ---cGG-CGCGCAGGUa--CACGUGCg -3'
miRNA:   3'- aguaCCgGUGCGUCCGgcgGUGCACG- -5'
6659 5' -60 NC_001847.1 + 2167 0.66 0.699717
Target:  5'- ---aGGUCuCGCAGcgcccgcGCCGCCugggcgGCGUGCg -3'
miRNA:   3'- aguaCCGGuGCGUC-------CGGCGG------UGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.