Results 1 - 20 of 758 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6659 | 5' | -60 | NC_001847.1 | + | 101955 | 0.86 | 0.042954 |
Target: 5'- gUCAUGGCCGCgagcucGCGGGCCGUCACG-GCa -3' miRNA: 3'- -AGUACCGGUG------CGUCCGGCGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 87676 | 0.76 | 0.208091 |
Target: 5'- gCAUGGCCcggGCGCugGGGCUGCUGCG-GCg -3' miRNA: 3'- aGUACCGG---UGCG--UCCGGCGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 93295 | 0.77 | 0.193385 |
Target: 5'- ---cGGCggCGCGCAGGCCGCgcgCGCGUGUg -3' miRNA: 3'- aguaCCG--GUGCGUCCGGCG---GUGCACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 115064 | 0.77 | 0.188689 |
Target: 5'- gCcgGGCCGCGCcgcgGGaGCCGCCACGccGCu -3' miRNA: 3'- aGuaCCGGUGCG----UC-CGGCGGUGCa-CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 103699 | 0.77 | 0.188689 |
Target: 5'- ---cGGcCCGCGCcgGGGCCGCCGCG-GCc -3' miRNA: 3'- aguaCC-GGUGCG--UCCGGCGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 74396 | 0.77 | 0.188689 |
Target: 5'- ---gGGaCCGCGC-GGCCGCCGCGcGCg -3' miRNA: 3'- aguaCC-GGUGCGuCCGGCGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 131683 | 0.77 | 0.178267 |
Target: 5'- cCAUGGCCGCGCAGaacgcgcugugggcGCUGCCgcACGUGg -3' miRNA: 3'- aGUACCGGUGCGUC--------------CGGCGG--UGCACg -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 3670 | 0.77 | 0.175198 |
Target: 5'- cCAU-GCCA-GCAGGCCGCCGCGagccUGCg -3' miRNA: 3'- aGUAcCGGUgCGUCCGGCGGUGC----ACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 77576 | 0.77 | 0.170896 |
Target: 5'- ---cGGCCGCGCGGGCCGagcucgCACGgcgGCa -3' miRNA: 3'- aguaCCGGUGCGUCCGGCg-----GUGCa--CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 106525 | 0.77 | 0.170896 |
Target: 5'- ---gGGCCcCGC-GGCCGCCGCGUaGCg -3' miRNA: 3'- aguaCCGGuGCGuCCGGCGGUGCA-CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 75707 | 0.78 | 0.150774 |
Target: 5'- cUcgGGCCAcgggcCGCGGGCCGCCGcCGUGg -3' miRNA: 3'- aGuaCCGGU-----GCGUCCGGCGGU-GCACg -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 134265 | 0.79 | 0.139757 |
Target: 5'- ---cGGCCccgGCGCGGGCCGCCGCcgcgcguggagGUGCu -3' miRNA: 3'- aguaCCGG---UGCGUCCGGCGGUG-----------CACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 52109 | 0.79 | 0.136252 |
Target: 5'- gUCAUGGCCACGCGGcCCGCgguaGUGCu -3' miRNA: 3'- -AGUACCGGUGCGUCcGGCGgug-CACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 133710 | 0.79 | 0.132828 |
Target: 5'- -gGUGGCCACGCgccuGGGcCCGCCACcgcgGUGCc -3' miRNA: 3'- agUACCGGUGCG----UCC-GGCGGUG----CACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 34134 | 0.79 | 0.126217 |
Target: 5'- ----uGCCGCGguGGCCGCCGCG-GCg -3' miRNA: 3'- aguacCGGUGCguCCGGCGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 34457 | 0.8 | 0.108171 |
Target: 5'- ---aGGCCGCGguGGCCGCCgGCG-GCg -3' miRNA: 3'- aguaCCGGUGCguCCGGCGG-UGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 105685 | 0.82 | 0.087857 |
Target: 5'- ---aGGCCgacGCGCGGGCCGCCGCGccGCg -3' miRNA: 3'- aguaCCGG---UGCGUCCGGCGGUGCa-CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 10061 | 0.83 | 0.077061 |
Target: 5'- aUCuUGGCCGCGCGGGCCcagcgccccGCCGCGcGCg -3' miRNA: 3'- -AGuACCGGUGCGUCCGG---------CGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 133801 | 0.83 | 0.073108 |
Target: 5'- aCAUGGCCGCGCAGGgCGCgGCGcugggGCu -3' miRNA: 3'- aGUACCGGUGCGUCCgGCGgUGCa----CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 106238 | 1.12 | 0.000665 |
Target: 5'- cUCAUGGCCACGCAGGCCGCCACGUGCg -3' miRNA: 3'- -AGUACCGGUGCGUCCGGCGGUGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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