Results 1 - 20 of 758 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6659 | 5' | -60 | NC_001847.1 | + | 422 | 0.67 | 0.660803 |
Target: 5'- cCcgGGgCGgGCGGGCgGCgGCGgcgGCg -3' miRNA: 3'- aGuaCCgGUgCGUCCGgCGgUGCa--CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 491 | 0.66 | 0.730075 |
Target: 5'- ---cGGCgGCG-GGGCgGCCGCGcGCc -3' miRNA: 3'- aguaCCGgUGCgUCCGgCGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 886 | 0.77 | 0.188689 |
Target: 5'- ---cGGcCCGCGCcgGGGCCGCCGCG-GCc -3' miRNA: 3'- aguaCC-GGUGCG--UCCGGCGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 946 | 0.67 | 0.670833 |
Target: 5'- ---cGGcCCGCGCGcGCCGCucCACGcUGCg -3' miRNA: 3'- aguaCC-GGUGCGUcCGGCG--GUGC-ACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 975 | 0.72 | 0.378411 |
Target: 5'- cCcgGGCCG-GCGGGgcuuCCGCCGCGgcgGCg -3' miRNA: 3'- aGuaCCGGUgCGUCC----GGCGGUGCa--CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 1005 | 0.71 | 0.429008 |
Target: 5'- ---cGGCaCGCGCuccaccAGGCCGCCGCccGCg -3' miRNA: 3'- aguaCCG-GUGCG------UCCGGCGGUGcaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 1103 | 0.75 | 0.240404 |
Target: 5'- ---cGGCCGCggGCGGcGCCGCCGCG-GCc -3' miRNA: 3'- aguaCCGGUG--CGUC-CGGCGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 1172 | 0.75 | 0.252071 |
Target: 5'- ---cGGCCGCGCAGaaggccaCCGCCGCGgccgGCa -3' miRNA: 3'- aguaCCGGUGCGUCc------GGCGGUGCa---CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 1448 | 0.75 | 0.246181 |
Target: 5'- gCGUGGCCaccguguaGCGCAcguuGCCGCCGCG-GCa -3' miRNA: 3'- aGUACCGG--------UGCGUc---CGGCGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 1600 | 0.67 | 0.620541 |
Target: 5'- cUcgGGCCAgCGCGcGGCgcacugCGCCGCG-GCa -3' miRNA: 3'- aGuaCCGGU-GCGU-CCG------GCGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 1640 | 0.66 | 0.700706 |
Target: 5'- ---cGG-CGCGCAGGUa--CACGUGCg -3' miRNA: 3'- aguaCCgGUGCGUCCGgcgGUGCACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 1720 | 0.7 | 0.483378 |
Target: 5'- aUCAgccgccGCCGCGCcgcGGCCaGCCGCGcGCa -3' miRNA: 3'- -AGUac----CGGUGCGu--CCGG-CGGUGCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 1938 | 0.7 | 0.455756 |
Target: 5'- ---cGGCCACuCGGGCCGCCG-GcGCu -3' miRNA: 3'- aguaCCGGUGcGUCCGGCGGUgCaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 2045 | 0.72 | 0.34698 |
Target: 5'- cCGUGGCCACGauaGGGUC-UUugGUGCg -3' miRNA: 3'- aGUACCGGUGCg--UCCGGcGGugCACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 2056 | 0.69 | 0.502232 |
Target: 5'- ---aGGCCACGC--GCCGCCGCa-GCg -3' miRNA: 3'- aguaCCGGUGCGucCGGCGGUGcaCG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 2167 | 0.66 | 0.699717 |
Target: 5'- ---aGGUCuCGCAGcgcccgcGCCGCCugggcgGCGUGCg -3' miRNA: 3'- aguaCCGGuGCGUC-------CGGCGG------UGCACG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 2207 | 0.72 | 0.386562 |
Target: 5'- cUCggGGCgGCaGUAGGCCGCCAgCGccGCg -3' miRNA: 3'- -AGuaCCGgUG-CGUCCGGCGGU-GCa-CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 2289 | 0.68 | 0.60043 |
Target: 5'- cCGUcGGCgGCG-GGGCCGCCGgGcgGCa -3' miRNA: 3'- aGUA-CCGgUGCgUCCGGCGGUgCa-CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 2352 | 0.69 | 0.521402 |
Target: 5'- ----cGCCGCGCcGGCCcgGCCGCGUcgGCg -3' miRNA: 3'- aguacCGGUGCGuCCGG--CGGUGCA--CG- -5' |
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6659 | 5' | -60 | NC_001847.1 | + | 2440 | 0.67 | 0.630612 |
Target: 5'- ---cGGCCG-GCAgGGCCGCCGCcucGCc -3' miRNA: 3'- aguaCCGGUgCGU-CCGGCGGUGca-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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