miRNA display CGI


Results 1 - 20 of 758 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6659 5' -60 NC_001847.1 + 106238 1.12 0.000665
Target:  5'- cUCAUGGCCACGCAGGCCGCCACGUGCg -3'
miRNA:   3'- -AGUACCGGUGCGUCCGGCGGUGCACG- -5'
6659 5' -60 NC_001847.1 + 3425 1.12 0.000665
Target:  5'- cUCAUGGCCACGCAGGCCGCCACGUGCg -3'
miRNA:   3'- -AGUACCGGUGCGUCCGGCGGUGCACG- -5'
6659 5' -60 NC_001847.1 + 101955 0.86 0.042954
Target:  5'- gUCAUGGCCGCgagcucGCGGGCCGUCACG-GCa -3'
miRNA:   3'- -AGUACCGGUG------CGUCCGGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 30988 0.83 0.073108
Target:  5'- aCAUGGCCGCGCAGGgCGCgGCGcugggGCu -3'
miRNA:   3'- aGUACCGGUGCGUCCgGCGgUGCa----CG- -5'
6659 5' -60 NC_001847.1 + 133801 0.83 0.073108
Target:  5'- aCAUGGCCGCGCAGGgCGCgGCGcugggGCu -3'
miRNA:   3'- aGUACCGGUGCGUCCgGCGgUGCa----CG- -5'
6659 5' -60 NC_001847.1 + 10061 0.83 0.077061
Target:  5'- aUCuUGGCCGCGCGGGCCcagcgccccGCCGCGcGCg -3'
miRNA:   3'- -AGuACCGGUGCGUCCGG---------CGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 105685 0.82 0.087857
Target:  5'- ---aGGCCgacGCGCGGGCCGCCGCGccGCg -3'
miRNA:   3'- aguaCCGG---UGCGUCCGGCGGUGCa-CG- -5'
6659 5' -60 NC_001847.1 + 73769 0.82 0.087857
Target:  5'- ---cGGCgGCGCGGGCCGCUACGaGCg -3'
miRNA:   3'- aguaCCGgUGCGUCCGGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 2872 0.82 0.087857
Target:  5'- ---aGGCCgacGCGCGGGCCGCCGCGccGCg -3'
miRNA:   3'- aguaCCGG---UGCGUCCGGCGGUGCa-CG- -5'
6659 5' -60 NC_001847.1 + 34457 0.8 0.108171
Target:  5'- ---aGGCCGCGguGGCCGCCgGCG-GCg -3'
miRNA:   3'- aguaCCGGUGCguCCGGCGG-UGCaCG- -5'
6659 5' -60 NC_001847.1 + 78281 0.8 0.119911
Target:  5'- --uUGGCCGCGCccGGGCCGCCGgGcGCa -3'
miRNA:   3'- aguACCGGUGCG--UCCGGCGGUgCaCG- -5'
6659 5' -60 NC_001847.1 + 53537 0.8 0.119911
Target:  5'- ---cGGCCACGCcGGCgGCCuCGUGCa -3'
miRNA:   3'- aguaCCGGUGCGuCCGgCGGuGCACG- -5'
6659 5' -60 NC_001847.1 + 62152 0.8 0.123026
Target:  5'- gCAUGGCCgcggcgGCGUAGGCCGCCGUGUaGCc -3'
miRNA:   3'- aGUACCGG------UGCGUCCGGCGGUGCA-CG- -5'
6659 5' -60 NC_001847.1 + 34134 0.79 0.126217
Target:  5'- ----uGCCGCGguGGCCGCCGCG-GCg -3'
miRNA:   3'- aguacCGGUGCguCCGGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 133710 0.79 0.132828
Target:  5'- -gGUGGCCACGCgccuGGGcCCGCCACcgcgGUGCc -3'
miRNA:   3'- agUACCGGUGCG----UCC-GGCGGUG----CACG- -5'
6659 5' -60 NC_001847.1 + 52109 0.79 0.136252
Target:  5'- gUCAUGGCCACGCGGcCCGCgguaGUGCu -3'
miRNA:   3'- -AGUACCGGUGCGUCcGGCGgug-CACG- -5'
6659 5' -60 NC_001847.1 + 134265 0.79 0.139757
Target:  5'- ---cGGCCccgGCGCGGGCCGCCGCcgcgcguggagGUGCu -3'
miRNA:   3'- aguaCCGG---UGCGUCCGGCGGUG-----------CACG- -5'
6659 5' -60 NC_001847.1 + 31452 0.79 0.139757
Target:  5'- ---cGGCCccgGCGCGGGCCGCCGCcgcgcguggagGUGCu -3'
miRNA:   3'- aguaCCGG---UGCGUCCGGCGGUG-----------CACG- -5'
6659 5' -60 NC_001847.1 + 45325 0.78 0.143345
Target:  5'- --uUGGCCGCGCGcuccacggcGGCUGCCACG-GCg -3'
miRNA:   3'- aguACCGGUGCGU---------CCGGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 75707 0.78 0.150774
Target:  5'- cUcgGGCCAcgggcCGCGGGCCGCCGcCGUGg -3'
miRNA:   3'- aGuaCCGGU-----GCGUCCGGCGGU-GCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.