miRNA display CGI


Results 21 - 40 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 130214 0.7 0.43784
Target:  5'- cGCGGaGGGC--GC-GGGAaGCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGuuCGuCCCUcCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 130003 0.66 0.689921
Target:  5'- cGCGGUGGG--GGUGGGGGGGgGgaaGGg -3'
miRNA:   3'- -CGCCACUCguUCGUCCCUCCgCg--CCg -5'
6662 3' -60.3 NC_001847.1 + 129303 0.68 0.589873
Target:  5'- gGCGGgccugGuGCAAgGCGGGccugccGGGCGCGGg -3'
miRNA:   3'- -CGCCa----CuCGUU-CGUCCc-----UCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 129150 0.72 0.354943
Target:  5'- gGCGGccgUGAGCAAGCAGGGAagaagGGgGaaaGGg -3'
miRNA:   3'- -CGCC---ACUCGUUCGUCCCU-----CCgCg--CCg -5'
6662 3' -60.3 NC_001847.1 + 128791 0.77 0.175374
Target:  5'- gGCGGUcagaccaGGGCGGGCGGGcGGGcGCGCaGGCg -3'
miRNA:   3'- -CGCCA-------CUCGUUCGUCC-CUC-CGCG-CCG- -5'
6662 3' -60.3 NC_001847.1 + 128721 0.67 0.619901
Target:  5'- uGCGGgGuGCGAGgGGGaGGGgGUGGUg -3'
miRNA:   3'- -CGCCaCuCGUUCgUCCcUCCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 128532 0.79 0.134793
Target:  5'- cGCGGcUGGGCccuucacacaggcaaAAGUAGGGAGGCagggccGCGGCg -3'
miRNA:   3'- -CGCC-ACUCG---------------UUCGUCCCUCCG------CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 128171 0.7 0.43784
Target:  5'- cCGGcaAGCugauGGCAGGG-GGCGgCGGCa -3'
miRNA:   3'- cGCCacUCGu---UCGUCCCuCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 127987 0.66 0.656021
Target:  5'- cCGGgcGAGCGAGCgcgacacgcccgaaGGGGAGGgGgcaagacCGGCa -3'
miRNA:   3'- cGCCa-CUCGUUCG--------------UCCCUCCgC-------GCCG- -5'
6662 3' -60.3 NC_001847.1 + 127340 0.72 0.332326
Target:  5'- gGCGGccGGCugccgcGGCAGGGGcGGCGgGGCc -3'
miRNA:   3'- -CGCCacUCGu-----UCGUCCCU-CCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 127145 0.67 0.639976
Target:  5'- cGCGG-GGGCGAuGUccaAGuGGAGGgGgGGCc -3'
miRNA:   3'- -CGCCaCUCGUU-CG---UC-CCUCCgCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 127076 0.67 0.599862
Target:  5'- gGCGGUGccccccucuGCGcGC-GGGccGCGCGGCu -3'
miRNA:   3'- -CGCCACu--------CGUuCGuCCCucCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 126208 0.75 0.235295
Target:  5'- -gGGUGGGCGgagcucacuuGGCGGGGucgucGGCGgGGCg -3'
miRNA:   3'- cgCCACUCGU----------UCGUCCCu----CCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 126005 0.72 0.353402
Target:  5'- uGgGGUGGGCugggcuaaccuugcGGCAGGucccuaggugcagucGAGGCGCGGUu -3'
miRNA:   3'- -CgCCACUCGu-------------UCGUCC---------------CUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 125945 0.67 0.629938
Target:  5'- uGgGGUGGGCuGGGCuGGGcugGGGUG-GGCu -3'
miRNA:   3'- -CgCCACUCG-UUCGuCCC---UCCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 125865 0.67 0.629938
Target:  5'- uGgGGUGGGCuGGGCuGGGcugGGGUG-GGCu -3'
miRNA:   3'- -CgCCACUCG-UUCGuCCC---UCCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 125775 0.67 0.629938
Target:  5'- uGgGGUGGGCuGGGCuGGGcugGGGUG-GGCu -3'
miRNA:   3'- -CgCCACUCG-UUCGuCCC---UCCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 125736 0.66 0.699804
Target:  5'- uGgGGUGGGCuGGCuGGGcuGGGCuG-GGCu -3'
miRNA:   3'- -CgCCACUCGuUCGuCCC--UCCG-CgCCG- -5'
6662 3' -60.3 NC_001847.1 + 125486 0.71 0.392505
Target:  5'- gGCGGgcgcGAGgacgcccggcugcuCGAGCGGcGGGccGGCGCGGCg -3'
miRNA:   3'- -CGCCa---CUC--------------GUUCGUC-CCU--CCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 125385 0.67 0.598862
Target:  5'- aGCGGUaAGCGGGCgccccGGGGcAGggcccgcccggucGCGUGGCa -3'
miRNA:   3'- -CGCCAcUCGUUCG-----UCCC-UC-------------CGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.