Results 1 - 20 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6662 | 3' | -60.3 | NC_001847.1 | + | 135128 | 0.66 | 0.719398 |
Target: 5'- cCGG--GGUc-GCAGGGGGcccGCGCGGCg -3' miRNA: 3'- cGCCacUCGuuCGUCCCUC---CGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 135020 | 0.7 | 0.43784 |
Target: 5'- -aGGcccGCGGGCGGGGccgGGGCGCGGg -3' miRNA: 3'- cgCCacuCGUUCGUCCC---UCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 134821 | 0.73 | 0.297025 |
Target: 5'- cGCGGgcgugGAGCGcgaAGCuccGGcGGGGCGCGGg -3' miRNA: 3'- -CGCCa----CUCGU---UCGu--CC-CUCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 134645 | 0.8 | 0.105981 |
Target: 5'- gGCGGgccgGcAGCAGGCGcGGAGGCGCGGg -3' miRNA: 3'- -CGCCa---C-UCGUUCGUcCCUCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 134515 | 0.74 | 0.283741 |
Target: 5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3' miRNA: 3'- cGCCaCUCGUUCguCCCUCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 134457 | 0.7 | 0.446726 |
Target: 5'- uGCGGcaGGGCAAGau-GGcauAGGCGCGGCc -3' miRNA: 3'- -CGCCa-CUCGUUCgucCC---UCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 134419 | 0.7 | 0.455712 |
Target: 5'- cGCGGgaaGGgAGGgAGGGGGcGCGaCGGCg -3' miRNA: 3'- -CGCCac-UCgUUCgUCCCUC-CGC-GCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 134023 | 0.69 | 0.530777 |
Target: 5'- gGCGGUcucgccAGCGucGCAGGGGcaCGCGGCg -3' miRNA: 3'- -CGCCAc-----UCGUu-CGUCCCUccGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 133589 | 0.69 | 0.502022 |
Target: 5'- cGCGGgcgcgcuaucGGGCGGGCGGGcuuGG-GCGGCa -3' miRNA: 3'- -CGCCa---------CUCGUUCGUCCcu-CCgCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 133398 | 0.7 | 0.43784 |
Target: 5'- cGCGGUgGAGUAccucugcgcgcGGCuGGccgcGGCGCGGCg -3' miRNA: 3'- -CGCCA-CUCGU-----------UCGuCCcu--CCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 133146 | 0.72 | 0.346526 |
Target: 5'- cGUGGUGGugcucuacgacccGCugccCGGGGAGGCGCuGGCg -3' miRNA: 3'- -CGCCACU-------------CGuuc-GUCCCUCCGCG-CCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 132490 | 0.67 | 0.639976 |
Target: 5'- gGCGGaggacGGGgAGGaCGGGGAGGaCGaagaGGCg -3' miRNA: 3'- -CGCCa----CUCgUUC-GUCCCUCC-GCg---CCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 132429 | 0.72 | 0.335279 |
Target: 5'- cGUGGUGGggcagguucgcaagcGCAAGCuGGaGGGCGCGGa -3' miRNA: 3'- -CGCCACU---------------CGUUCGuCCcUCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 132361 | 0.68 | 0.560109 |
Target: 5'- cGCGGcccugGAggccGCcGGCGGGGGcgccGGCGcCGGCg -3' miRNA: 3'- -CGCCa----CU----CGuUCGUCCCU----CCGC-GCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 132133 | 0.7 | 0.47397 |
Target: 5'- cGCGGcccGCGAcGCGGuGGAGcgcGCGCGGCu -3' miRNA: 3'- -CGCCacuCGUU-CGUC-CCUC---CGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 131909 | 0.67 | 0.599862 |
Target: 5'- cCGGcGAGCAcGGCGcGGGcGGCGCGcgaGCg -3' miRNA: 3'- cGCCaCUCGU-UCGU-CCCuCCGCGC---CG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 130865 | 0.68 | 0.567022 |
Target: 5'- gGCGGgggcGGCGccccucaaggccgaAGCGGGGAcugaggcggGGgGCGGCg -3' miRNA: 3'- -CGCCac--UCGU--------------UCGUCCCU---------CCgCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 130787 | 0.7 | 0.429056 |
Target: 5'- cGCGGUGgaGGCGgccgcggccggGGCGGaGGcGGCcGCGGCc -3' miRNA: 3'- -CGCCAC--UCGU-----------UCGUC-CCuCCG-CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 130707 | 0.68 | 0.579914 |
Target: 5'- cGCGGaGuGCGccgaggccgaGGgGGcGGAGGCGCGGa -3' miRNA: 3'- -CGCCaCuCGU----------UCgUC-CCUCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 130559 | 0.79 | 0.126815 |
Target: 5'- gGCGGauGGUggGCGGGGAGGaCGCGGa -3' miRNA: 3'- -CGCCacUCGuuCGUCCCUCC-GCGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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