Results 1 - 20 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6662 | 3' | -60.3 | NC_001847.1 | + | 69295 | 0.66 | 0.689921 |
Target: 5'- cGCGGgcguGCGGGCGGaccGGcugccuuuuGGGCGCGGg -3' miRNA: 3'- -CGCCacu-CGUUCGUC---CC---------UCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 107780 | 0.66 | 0.699804 |
Target: 5'- cGCGcccGGGgGGGCAGcuGGGGCuGCGGCg -3' miRNA: 3'- -CGCca-CUCgUUCGUCc-CUCCG-CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 125736 | 0.66 | 0.699804 |
Target: 5'- uGgGGUGGGCuGGCuGGGcuGGGCuG-GGCu -3' miRNA: 3'- -CgCCACUCGuUCGuCCC--UCCG-CgCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 14791 | 0.66 | 0.699804 |
Target: 5'- cGCGGcGuacaaaaccGC-AGCGGcGGAGcuGCGCGGCg -3' miRNA: 3'- -CGCCaCu--------CGuUCGUC-CCUC--CGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 130003 | 0.66 | 0.689921 |
Target: 5'- cGCGGUGGG--GGUGGGGGGGgGgaaGGg -3' miRNA: 3'- -CGCCACUCguUCGUCCCUCCgCg--CCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 87949 | 0.66 | 0.669025 |
Target: 5'- cGCGGUGAGCGuguucaaAGUgauauGGGAagagguguucggGGCcCGGCu -3' miRNA: 3'- -CGCCACUCGU-------UCGu----CCCU------------CCGcGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 71070 | 0.66 | 0.670024 |
Target: 5'- cCGGUGcuGGCGGcGCucGGccGGCGCGGCc -3' miRNA: 3'- cGCCAC--UCGUU-CGucCCu-CCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 42602 | 0.66 | 0.660027 |
Target: 5'- gGUGGUGAcagggacgGCGccgccGCGGaGGGGG-GCGGCa -3' miRNA: 3'- -CGCCACU--------CGUu----CGUC-CCUCCgCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 18003 | 0.66 | 0.699804 |
Target: 5'- aGCGucgGGGCuguuGGGCGuGGGGGGCGuuGCg -3' miRNA: 3'- -CGCca-CUCG----UUCGU-CCCUCCGCgcCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 70367 | 0.66 | 0.699804 |
Target: 5'- ----aGAGCGAGgGGGcgccGGGGCGCGaGCu -3' miRNA: 3'- cgccaCUCGUUCgUCC----CUCCGCGC-CG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 112940 | 0.66 | 0.689921 |
Target: 5'- aCGGac-GCGuGCuGGGAGGCGCuGCu -3' miRNA: 3'- cGCCacuCGUuCGuCCCUCCGCGcCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 2193 | 0.66 | 0.706691 |
Target: 5'- gGCGGcGuGCGGGCGcaccucaaacaugcGGuaGAGGuCGCGGCc -3' miRNA: 3'- -CGCCaCuCGUUCGU--------------CC--CUCC-GCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 53611 | 0.66 | 0.689921 |
Target: 5'- aCGGUG-GCGGGCGGc--GGgGUGGCa -3' miRNA: 3'- cGCCACuCGUUCGUCccuCCgCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 64691 | 0.66 | 0.719398 |
Target: 5'- cGCGcGUGucGCAGuGC-GucAGGCGCGGCa -3' miRNA: 3'- -CGC-CACu-CGUU-CGuCccUCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 127987 | 0.66 | 0.656021 |
Target: 5'- cCGGgcGAGCGAGCgcgacacgcccgaaGGGGAGGgGgcaagacCGGCa -3' miRNA: 3'- cGCCa-CUCGUUCG--------------UCCCUCCgC-------GCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 120675 | 0.66 | 0.689921 |
Target: 5'- uCGGUGAGCccgGAGacccaGAGGCcGCGGCc -3' miRNA: 3'- cGCCACUCG---UUCgucc-CUCCG-CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 35177 | 0.66 | 0.699804 |
Target: 5'- cCGG-GGGCAcGCGGccuucgaggaGGAGcgcGCGCGGCu -3' miRNA: 3'- cGCCaCUCGUuCGUC----------CCUC---CGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 72394 | 0.66 | 0.689921 |
Target: 5'- gGUGGUGGacGCGGGCcccgacgcGGGGAcGGCcaCGGCc -3' miRNA: 3'- -CGCCACU--CGUUCG--------UCCCU-CCGc-GCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 84230 | 0.66 | 0.670024 |
Target: 5'- aCGGccgGGGCcgccGCgGGGGAGGaggGCGGCg -3' miRNA: 3'- cGCCa--CUCGuu--CG-UCCCUCCg--CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 34014 | 0.66 | 0.699804 |
Target: 5'- gGCGGUGcugGGCAccgcGCuGGGccAGGCgaugggccccGCGGCg -3' miRNA: 3'- -CGCCAC---UCGUu---CGuCCC--UCCG----------CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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