miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 36 0.66 0.709633
Target:  5'- cCGGggGGGUguuuuuGGGgGGGGGcggaaauuucGGCGCGGCg -3'
miRNA:   3'- cGCCa-CUCG------UUCgUCCCU----------CCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 66 0.8 0.117458
Target:  5'- gGCGGgcggGGGCGGGguGGGggauGGGCGCGGa -3'
miRNA:   3'- -CGCCa---CUCGUUCguCCC----UCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 139 0.66 0.709633
Target:  5'- cGCGGgccucGGGCcccGGCcGGGGGGC-CGGg -3'
miRNA:   3'- -CGCCa----CUCGu--UCGuCCCUCCGcGCCg -5'
6662 3' -60.3 NC_001847.1 + 424 0.74 0.258593
Target:  5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3'
miRNA:   3'- -CgCCaCUCGUUCGUC-CCuCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 471 0.69 0.502022
Target:  5'- gGCGGcgGcGGCAgcAGCGGcGGcGGCGgGGCg -3'
miRNA:   3'- -CGCCa-C-UCGU--UCGUC-CCuCCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 526 0.69 0.511535
Target:  5'- cGCGGaGGGCAAgugcccgacGCGGGGAa-CGUGGCg -3'
miRNA:   3'- -CGCCaCUCGUU---------CGUCCCUccGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 1261 0.67 0.639976
Target:  5'- aGCGGcgcgccGAGCccccAGCGGuuGGcGGCGCGGUg -3'
miRNA:   3'- -CGCCa-----CUCGu---UCGUC--CCuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 1428 0.68 0.540497
Target:  5'- cGCGGUGcGCGGGCccAGGc--GCGUGGCc -3'
miRNA:   3'- -CGCCACuCGUUCG--UCCcucCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 1915 0.67 0.609873
Target:  5'- uGCGG--GGCAGGUGGcGAGGCuuagccggcgcGCGGCg -3'
miRNA:   3'- -CGCCacUCGUUCGUCcCUCCG-----------CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 2073 0.77 0.180206
Target:  5'- aGCGGUGgcGGCGAGCGccccgcGGGGcccGCGCGGCg -3'
miRNA:   3'- -CGCCAC--UCGUUCGU------CCCUc--CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 2193 0.66 0.706691
Target:  5'- gGCGGcGuGCGGGCGcaccucaaacaugcGGuaGAGGuCGCGGCc -3'
miRNA:   3'- -CGCCaCuCGUUCGU--------------CC--CUCC-GCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 2234 0.66 0.708653
Target:  5'- cGCGGcgcUGGGCGcgGGCGugugguaguccccGGGcGGCacGCGGCg -3'
miRNA:   3'- -CGCC---ACUCGU--UCGU-------------CCCuCCG--CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 2310 0.7 0.43784
Target:  5'- gGCGGcaUGGGCcccAGCAcgcGGGcGGGCaGCGGCg -3'
miRNA:   3'- -CGCC--ACUCGu--UCGU---CCC-UCCG-CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 3124 0.71 0.378623
Target:  5'- cGCGGccgaGAGCAccgggagcccGGCGGcgccGGcGGCGCGGCg -3'
miRNA:   3'- -CGCCa---CUCGU----------UCGUC----CCuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 3279 0.69 0.520159
Target:  5'- cGCGGccGGCGAGCAcggcgcgcagcucGGcGA-GCGCGGCg -3'
miRNA:   3'- -CGCCacUCGUUCGU-------------CC-CUcCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 3410 0.73 0.325026
Target:  5'- aGCGGgaGAGCA-GCccGGGGGCGCcaGGCg -3'
miRNA:   3'- -CGCCa-CUCGUuCGucCCUCCGCG--CCG- -5'
6662 3' -60.3 NC_001847.1 + 3971 0.67 0.609873
Target:  5'- gGCGGcGAGgGcGCcGGGGGccgggcGCGCGGCc -3'
miRNA:   3'- -CGCCaCUCgUuCGuCCCUC------CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 4539 0.69 0.502022
Target:  5'- cGCGGcGGccGCccGC-GGGuGGCGCGGCg -3'
miRNA:   3'- -CGCCaCU--CGuuCGuCCCuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 4802 0.74 0.283741
Target:  5'- uGCGGUG-GCcugggggagacgGGGUAGGGGGGCG-GGUg -3'
miRNA:   3'- -CGCCACuCG------------UUCGUCCCUCCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 4876 0.68 0.550277
Target:  5'- gGCGGcGGGCAgcGGCAGGGcccccGCGCcGCu -3'
miRNA:   3'- -CGCCaCUCGU--UCGUCCCuc---CGCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.