Results 21 - 40 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6662 | 3' | -60.3 | NC_001847.1 | + | 4969 | 0.71 | 0.411804 |
Target: 5'- cGCGccGGGgGGGCAGcuGGGGUGCGGCg -3' miRNA: 3'- -CGCcaCUCgUUCGUCc-CUCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 5000 | 0.68 | 0.589873 |
Target: 5'- cGCGGcaaAGCGcGGCGGcGGcGGCGCGGa -3' miRNA: 3'- -CGCCac-UCGU-UCGUC-CCuCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 5066 | 0.73 | 0.317846 |
Target: 5'- aCGGacGGCGGGCcGGGAGcGgGCGGCa -3' miRNA: 3'- cGCCacUCGUUCGuCCCUC-CgCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 5221 | 0.75 | 0.235295 |
Target: 5'- cGCGGcG-GCcGGCGGGGcGcGCGCGGCa -3' miRNA: 3'- -CGCCaCuCGuUCGUCCCuC-CGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 6057 | 1.13 | 0.000518 |
Target: 5'- gGCGGUGAGCAAGCAGGGAGGCGCGGCa -3' miRNA: 3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 6094 | 0.69 | 0.511535 |
Target: 5'- cGCGGaGGcGCGAGaCGcccGcGAGGCGCGGCg -3' miRNA: 3'- -CGCCaCU-CGUUC-GUc--C-CUCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 6151 | 1.12 | 0.000562 |
Target: 5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3' miRNA: 3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 6420 | 0.7 | 0.47397 |
Target: 5'- uCGGggaaGGCGAGUcccgAGGGGuuaggcGGCGCGGCg -3' miRNA: 3'- cGCCac--UCGUUCG----UCCCU------CCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 6808 | 0.71 | 0.386749 |
Target: 5'- aGgGG-GAGCAAGC----AGGCGCGGCg -3' miRNA: 3'- -CgCCaCUCGUUCGucccUCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 6839 | 0.77 | 0.171508 |
Target: 5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3' miRNA: 3'- -CGCCaCUCGuuCgUCCCUCCgCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 7213 | 0.68 | 0.544402 |
Target: 5'- cGCGGcUGGGCcguccauGGCGcugcagcggcuggucGGGuggcugugcGGGCGCGGCg -3' miRNA: 3'- -CGCC-ACUCGu------UCGU---------------CCC---------UCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 7421 | 0.67 | 0.619901 |
Target: 5'- aUGGggGGGgGGGgGGGGGGGCguacuugcaGCGGCc -3' miRNA: 3'- cGCCa-CUCgUUCgUCCCUCCG---------CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 7612 | 0.68 | 0.560109 |
Target: 5'- cGgGGUGGGguGGgGGGGuGGGUGgGGg -3' miRNA: 3'- -CgCCACUCguUCgUCCC-UCCGCgCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 7699 | 0.73 | 0.320703 |
Target: 5'- uGCGGUGcuggagcgcgccuugGGCAuucaggcGCAGGGcgcGGGCGCGGa -3' miRNA: 3'- -CGCCAC---------------UCGUu------CGUCCC---UCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 8062 | 0.67 | 0.650008 |
Target: 5'- cGCGGcccGCGcGCagAGGGGGGCaccgccGCGGCg -3' miRNA: 3'- -CGCCacuCGUuCG--UCCCUCCG------CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 8464 | 0.67 | 0.650008 |
Target: 5'- gGCGGcgccGGGCcggGGGCGGcgcucggccGGGGGCGgGGCc -3' miRNA: 3'- -CGCCa---CUCG---UUCGUC---------CCUCCGCgCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 8690 | 0.7 | 0.464794 |
Target: 5'- aCGGgGGGCuaGAGgAGGGGGGCGCacuGCa -3' miRNA: 3'- cGCCaCUCG--UUCgUCCCUCCGCGc--CG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 8982 | 0.7 | 0.43784 |
Target: 5'- cCGG-GGGCGGGCAGacGGGGGUGgGGg -3' miRNA: 3'- cGCCaCUCGUUCGUC--CCUCCGCgCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 9510 | 0.67 | 0.650008 |
Target: 5'- aGCGGacccGAGcCGAGC-GGGcGGCGCGcuaGCg -3' miRNA: 3'- -CGCCa---CUC-GUUCGuCCCuCCGCGC---CG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 10094 | 0.72 | 0.354943 |
Target: 5'- cGCGG-GAGCAcaagcGGCGGGGAaagccgccuuCGCGGCg -3' miRNA: 3'- -CGCCaCUCGU-----UCGUCCCUcc--------GCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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