miRNA display CGI


Results 21 - 40 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 68451 0.66 0.660027
Target:  5'- cGCGG-GAGCGcccGCuGuGGAGGCGagGGUu -3'
miRNA:   3'- -CGCCaCUCGUu--CGuC-CCUCCGCg-CCG- -5'
6662 3' -60.3 NC_001847.1 + 83180 0.66 0.709633
Target:  5'- aCGGgcuGGCGgacGGCGGGG-GGCGC-GCa -3'
miRNA:   3'- cGCCac-UCGU---UCGUCCCuCCGCGcCG- -5'
6662 3' -60.3 NC_001847.1 + 35177 0.66 0.699804
Target:  5'- cCGG-GGGCAcGCGGccuucgaggaGGAGcgcGCGCGGCu -3'
miRNA:   3'- cGCCaCUCGUuCGUC----------CCUC---CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 49046 0.66 0.709633
Target:  5'- cGUGGUG-GCGcGCAGcucacGGccgcGGGCGgCGGCa -3'
miRNA:   3'- -CGCCACuCGUuCGUC-----CC----UCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 69295 0.66 0.689921
Target:  5'- cGCGGgcguGCGGGCGGaccGGcugccuuuuGGGCGCGGg -3'
miRNA:   3'- -CGCCacu-CGUUCGUC---CC---------UCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 65115 0.66 0.719398
Target:  5'- cGCGGcucGGCuGGCGGuGGGGCuCGGCu -3'
miRNA:   3'- -CGCCac-UCGuUCGUCcCUCCGcGCCG- -5'
6662 3' -60.3 NC_001847.1 + 112940 0.66 0.689921
Target:  5'- aCGGac-GCGuGCuGGGAGGCGCuGCu -3'
miRNA:   3'- cGCCacuCGUuCGuCCCUCCGCGcCG- -5'
6662 3' -60.3 NC_001847.1 + 18003 0.66 0.699804
Target:  5'- aGCGucgGGGCuguuGGGCGuGGGGGGCGuuGCg -3'
miRNA:   3'- -CGCca-CUCG----UUCGU-CCCUCCGCgcCG- -5'
6662 3' -60.3 NC_001847.1 + 127987 0.66 0.656021
Target:  5'- cCGGgcGAGCGAGCgcgacacgcccgaaGGGGAGGgGgcaagacCGGCa -3'
miRNA:   3'- cGCCa-CUCGUUCG--------------UCCCUCCgC-------GCCG- -5'
6662 3' -60.3 NC_001847.1 + 94147 0.66 0.660027
Target:  5'- gGUGcUGGGCGAcaucucGCGGcGGcugcuGGGCGCGGCc -3'
miRNA:   3'- -CGCcACUCGUU------CGUC-CC-----UCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 2193 0.66 0.706691
Target:  5'- gGCGGcGuGCGGGCGcaccucaaacaugcGGuaGAGGuCGCGGCc -3'
miRNA:   3'- -CGCCaCuCGUUCGU--------------CC--CUCC-GCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 18652 0.66 0.659026
Target:  5'- cCGGUGAGCGauccGGCGGGagugcagguacgcGAGGCcccGCaGCa -3'
miRNA:   3'- cGCCACUCGU----UCGUCC-------------CUCCG---CGcCG- -5'
6662 3' -60.3 NC_001847.1 + 107780 0.66 0.699804
Target:  5'- cGCGcccGGGgGGGCAGcuGGGGCuGCGGCg -3'
miRNA:   3'- -CGCca-CUCgUUCGUCc-CUCCG-CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 96780 0.66 0.664029
Target:  5'- cCGGUGccGGCGcuggggcugaagcugGGUcGGGGGGCGCGcaGCg -3'
miRNA:   3'- cGCCAC--UCGU---------------UCGuCCCUCCGCGC--CG- -5'
6662 3' -60.3 NC_001847.1 + 17886 0.66 0.660027
Target:  5'- gGCGGccccGCAgAGCAGGauuaGGGCGaCGGCg -3'
miRNA:   3'- -CGCCacu-CGU-UCGUCCc---UCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 75639 0.66 0.709633
Target:  5'- aCGGcGAuGCcgGAGCc-GGAGGCGCGGg -3'
miRNA:   3'- cGCCaCU-CG--UUCGucCCUCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 102952 0.66 0.709633
Target:  5'- cGCGGgccucGGGCcccGGCcGGGGGGC-CGGg -3'
miRNA:   3'- -CGCCa----CUCGu--UCGuCCCUCCGcGCCg -5'
6662 3' -60.3 NC_001847.1 + 125736 0.66 0.699804
Target:  5'- uGgGGUGGGCuGGCuGGGcuGGGCuG-GGCu -3'
miRNA:   3'- -CgCCACUCGuUCGuCCC--UCCG-CgCCG- -5'
6662 3' -60.3 NC_001847.1 + 84230 0.66 0.670024
Target:  5'- aCGGccgGGGCcgccGCgGGGGAGGaggGCGGCg -3'
miRNA:   3'- cGCCa--CUCGuu--CG-UCCCUCCg--CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 64691 0.66 0.719398
Target:  5'- cGCGcGUGucGCAGuGC-GucAGGCGCGGCa -3'
miRNA:   3'- -CGC-CACu-CGUU-CGuCccUCCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.