Results 1 - 20 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6662 | 3' | -60.3 | NC_001847.1 | + | 108870 | 1.13 | 0.000518 |
Target: 5'- gGCGGUGAGCAAGCAGGGAGGCGCGGCa -3' miRNA: 3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 6057 | 1.13 | 0.000518 |
Target: 5'- gGCGGUGAGCAAGCAGGGAGGCGCGGCa -3' miRNA: 3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 108964 | 1.12 | 0.000562 |
Target: 5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3' miRNA: 3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 6151 | 1.12 | 0.000562 |
Target: 5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3' miRNA: 3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 100535 | 0.82 | 0.083902 |
Target: 5'- cGCGGagUGGGUggGCGGGGAgccGGcCGCGGCg -3' miRNA: 3'- -CGCC--ACUCGuuCGUCCCU---CC-GCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 43237 | 0.82 | 0.086121 |
Target: 5'- gGCGGUGGGgGcGCGcGGGcGGCGCGGCg -3' miRNA: 3'- -CGCCACUCgUuCGU-CCCuCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 15333 | 0.81 | 0.088395 |
Target: 5'- aGCGG-GGGCGGGCGGGGGGuGCGUgauGGCu -3' miRNA: 3'- -CGCCaCUCGUUCGUCCCUC-CGCG---CCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 102662 | 0.81 | 0.090726 |
Target: 5'- cCGG-GAGCGgccgcgagGGCGGGGGGGCGgGGCg -3' miRNA: 3'- cGCCaCUCGU--------UCGUCCCUCCGCgCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 134645 | 0.8 | 0.105981 |
Target: 5'- gGCGGgccgGcAGCAGGCGcGGAGGCGCGGg -3' miRNA: 3'- -CGCCa---C-UCGUUCGUcCCUCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 96368 | 0.8 | 0.111581 |
Target: 5'- gGCGGUG-GCAauGGCGGGGccGGCGgCGGCa -3' miRNA: 3'- -CGCCACuCGU--UCGUCCCu-CCGC-GCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 84458 | 0.8 | 0.117458 |
Target: 5'- cGCGGggggugggGAGCGGGgGGGGGGGCGgGGg -3' miRNA: 3'- -CGCCa-------CUCGUUCgUCCCUCCGCgCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 66 | 0.8 | 0.117458 |
Target: 5'- gGCGGgcggGGGCGGGguGGGggauGGGCGCGGa -3' miRNA: 3'- -CGCCa---CUCGUUCguCCC----UCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 130559 | 0.79 | 0.126815 |
Target: 5'- gGCGGauGGUggGCGGGGAGGaCGCGGa -3' miRNA: 3'- -CGCCacUCGuuCGUCCCUCC-GCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 27746 | 0.79 | 0.126815 |
Target: 5'- gGCGGauGGUggGCGGGGAGGaCGCGGa -3' miRNA: 3'- -CGCCacUCGuuCGUCCCUCC-GCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 128532 | 0.79 | 0.134793 |
Target: 5'- cGCGGcUGGGCccuucacacaggcaaAAGUAGGGAGGCagggccGCGGCg -3' miRNA: 3'- -CGCC-ACUCG---------------UUCGUCCCUCCG------CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 25719 | 0.79 | 0.134793 |
Target: 5'- cGCGGcUGGGCccuucacacaggcaaAAGUAGGGAGGCagggccGCGGCg -3' miRNA: 3'- -CGCC-ACUCG---------------UUCGUCCCUCCG------CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 59550 | 0.79 | 0.136858 |
Target: 5'- gGCGGUGGGgGcGGCGGGGGcGGUGcCGGCg -3' miRNA: 3'- -CGCCACUCgU-UCGUCCCU-CCGC-GCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 51518 | 0.78 | 0.147257 |
Target: 5'- cCGGUGcggcgccGGCAGGCGGGGGcGGCGCccaGGCg -3' miRNA: 3'- cGCCAC-------UCGUUCGUCCCU-CCGCG---CCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 21854 | 0.77 | 0.167301 |
Target: 5'- uCGGUGcAGCAGGUGGugcGGGGGCuGCGGCg -3' miRNA: 3'- cGCCAC-UCGUUCGUC---CCUCCG-CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 109652 | 0.77 | 0.171508 |
Target: 5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3' miRNA: 3'- -CGCCaCUCGuuCgUCCCUCCgCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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