Results 1 - 20 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6662 | 3' | -60.3 | NC_001847.1 | + | 27521 | 0.75 | 0.233621 |
Target: 5'- cGCGGcG-GC-GGCGGGGAcgcccgagaacggcGGCGCGGCg -3' miRNA: 3'- -CGCCaCuCGuUCGUCCCU--------------CCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 128791 | 0.77 | 0.175374 |
Target: 5'- gGCGGUcagaccaGGGCGGGCGGGcGGGcGCGCaGGCg -3' miRNA: 3'- -CGCCA-------CUCGUUCGUCC-CUC-CGCG-CCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 104886 | 0.77 | 0.180206 |
Target: 5'- aGCGGUGgcGGCGAGCGccccgcGGGGcccGCGCGGCg -3' miRNA: 3'- -CGCCAC--UCGUUCGU------CCCUc--CGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 94216 | 0.77 | 0.1847 |
Target: 5'- cGCGGcgGAGCucgcGGCGGGGcgcccGCGCGGCg -3' miRNA: 3'- -CGCCa-CUCGu---UCGUCCCuc---CGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 29065 | 0.76 | 0.193985 |
Target: 5'- gGCGGUGGGCugcguGGCGGuGGcGG-GCGGCg -3' miRNA: 3'- -CGCCACUCGu----UCGUC-CCuCCgCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 54385 | 0.76 | 0.208678 |
Target: 5'- uGCGGcGGGCGGccGCGGGcGAGGCG-GGCg -3' miRNA: 3'- -CGCCaCUCGUU--CGUCC-CUCCGCgCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 87888 | 0.76 | 0.212242 |
Target: 5'- cGCGGcuuucUGGGCGgggcuuugcacaggGGCGGGGcguggggcuGGGCGCGGCc -3' miRNA: 3'- -CGCC-----ACUCGU--------------UCGUCCC---------UCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 59381 | 0.76 | 0.213785 |
Target: 5'- gGCGGccGGCAaaaaauacggAGcCGGcGGAGGCGCGGCg -3' miRNA: 3'- -CGCCacUCGU----------UC-GUC-CCUCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 48485 | 0.75 | 0.218473 |
Target: 5'- cGCGGgucGAGCGcGGCgcgcuccGGGGcGGCGCGGCc -3' miRNA: 3'- -CGCCa--CUCGU-UCG-------UCCCuCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 109652 | 0.77 | 0.171508 |
Target: 5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3' miRNA: 3'- -CGCCaCUCGuuCgUCCCUCCgCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 21854 | 0.77 | 0.167301 |
Target: 5'- uCGGUGcAGCAGGUGGugcGGGGGCuGCGGCg -3' miRNA: 3'- cGCCAC-UCGUUCGUC---CCUCCG-CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 59550 | 0.79 | 0.136858 |
Target: 5'- gGCGGUGGGgGcGGCGGGGGcGGUGcCGGCg -3' miRNA: 3'- -CGCCACUCgU-UCGUCCCU-CCGC-GCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 108964 | 1.12 | 0.000562 |
Target: 5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3' miRNA: 3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 100535 | 0.82 | 0.083902 |
Target: 5'- cGCGGagUGGGUggGCGGGGAgccGGcCGCGGCg -3' miRNA: 3'- -CGCC--ACUCGuuCGUCCCU---CC-GCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 43237 | 0.82 | 0.086121 |
Target: 5'- gGCGGUGGGgGcGCGcGGGcGGCGCGGCg -3' miRNA: 3'- -CGCCACUCgUuCGU-CCCuCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 102662 | 0.81 | 0.090726 |
Target: 5'- cCGG-GAGCGgccgcgagGGCGGGGGGGCGgGGCg -3' miRNA: 3'- cGCCaCUCGU--------UCGUCCCUCCGCgCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 66 | 0.8 | 0.117458 |
Target: 5'- gGCGGgcggGGGCGGGguGGGggauGGGCGCGGa -3' miRNA: 3'- -CGCCa---CUCGUUCguCCC----UCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 84458 | 0.8 | 0.117458 |
Target: 5'- cGCGGggggugggGAGCGGGgGGGGGGGCGgGGg -3' miRNA: 3'- -CGCCa-------CUCGUUCgUCCCUCCGCgCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 130559 | 0.79 | 0.126815 |
Target: 5'- gGCGGauGGUggGCGGGGAGGaCGCGGa -3' miRNA: 3'- -CGCCacUCGuuCGUCCCUCC-GCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 128532 | 0.79 | 0.134793 |
Target: 5'- cGCGGcUGGGCccuucacacaggcaaAAGUAGGGAGGCagggccGCGGCg -3' miRNA: 3'- -CGCC-ACUCG---------------UUCGUCCCUCCG------CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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