miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 6057 1.13 0.000518
Target:  5'- gGCGGUGAGCAAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 109274 0.75 0.223784
Target:  5'- gGCGGgcuGCAAGCgAGGGGGGCGagcaagaUGGCg -3'
miRNA:   3'- -CGCCacuCGUUCG-UCCCUCCGC-------GCCG- -5'
6662 3' -60.3 NC_001847.1 + 5221 0.75 0.235295
Target:  5'- cGCGGcG-GCcGGCGGGGcGcGCGCGGCa -3'
miRNA:   3'- -CGCCaCuCGuUCGUCCCuC-CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 64691 0.66 0.719398
Target:  5'- cGCGcGUGucGCAGuGC-GucAGGCGCGGCa -3'
miRNA:   3'- -CGC-CACu-CGUU-CGuCccUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 96368 0.8 0.111581
Target:  5'- gGCGGUG-GCAauGGCGGGGccGGCGgCGGCa -3'
miRNA:   3'- -CGCCACuCGU--UCGUCCCu-CCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 27746 0.79 0.126815
Target:  5'- gGCGGauGGUggGCGGGGAGGaCGCGGa -3'
miRNA:   3'- -CGCCacUCGuuCGUCCCUCC-GCGCCg -5'
6662 3' -60.3 NC_001847.1 + 51518 0.78 0.147257
Target:  5'- cCGGUGcggcgccGGCAGGCGGGGGcGGCGCccaGGCg -3'
miRNA:   3'- cGCCAC-------UCGUUCGUCCCU-CCGCG---CCG- -5'
6662 3' -60.3 NC_001847.1 + 6839 0.77 0.171508
Target:  5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGuuCgUCCCUCCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 2073 0.77 0.180206
Target:  5'- aGCGGUGgcGGCGAGCGccccgcGGGGcccGCGCGGCg -3'
miRNA:   3'- -CGCCAC--UCGUUCGU------CCCUc--CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 33829 0.76 0.203676
Target:  5'- -aGGgGAGCGGGCuuGGGAGuCGCGGCg -3'
miRNA:   3'- cgCCaCUCGUUCGu-CCCUCcGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 96410 0.76 0.193985
Target:  5'- gGCGGcG-GCAauGGCGGGGccggcggcAGGCGCGGCc -3'
miRNA:   3'- -CGCCaCuCGU--UCGUCCC--------UCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 25978 0.77 0.175374
Target:  5'- gGCGGUcagaccaGGGCGGGCGGGcGGGcGCGCaGGCg -3'
miRNA:   3'- -CGCCA-------CUCGUUCGUCC-CUC-CGCG-CCG- -5'
6662 3' -60.3 NC_001847.1 + 6151 1.12 0.000562
Target:  5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 70243 0.76 0.198779
Target:  5'- cGCGcG-GGGCGGGCGGcGGGcGCGCGGCg -3'
miRNA:   3'- -CGC-CaCUCGUUCGUC-CCUcCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 15333 0.81 0.088395
Target:  5'- aGCGG-GGGCGGGCGGGGGGuGCGUgauGGCu -3'
miRNA:   3'- -CGCCaCUCGUUCGUCCCUC-CGCG---CCG- -5'
6662 3' -60.3 NC_001847.1 + 33009 0.77 0.171508
Target:  5'- aGCGGccgggGGGCGcGCGGGGcgAGGCGCGGa -3'
miRNA:   3'- -CGCCa----CUCGUuCGUCCC--UCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 12351 0.76 0.203676
Target:  5'- aGCGGUGGGCcuGGCucGGGAGcGUcgGCGGCu -3'
miRNA:   3'- -CGCCACUCGu-UCGu-CCCUC-CG--CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 23395 0.75 0.235295
Target:  5'- -gGGUGGGCGgagcucacuuGGCGGGGucgucGGCGgGGCg -3'
miRNA:   3'- cgCCACUCGU----------UCGUCCCu----CCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 134645 0.8 0.105981
Target:  5'- gGCGGgccgGcAGCAGGCGcGGAGGCGCGGg -3'
miRNA:   3'- -CGCCa---C-UCGUUCGUcCCUCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 25719 0.79 0.134793
Target:  5'- cGCGGcUGGGCccuucacacaggcaaAAGUAGGGAGGCagggccGCGGCg -3'
miRNA:   3'- -CGCC-ACUCG---------------UUCGUCCCUCCG------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.