Results 21 - 40 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6662 | 3' | -60.3 | NC_001847.1 | + | 76748 | 0.66 | 0.709633 |
Target: 5'- aCGGUcGGGCGcucgGGCGGGGGGcaCGCaaaGGCg -3' miRNA: 3'- cGCCA-CUCGU----UCGUCCCUCc-GCG---CCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 83180 | 0.66 | 0.709633 |
Target: 5'- aCGGgcuGGCGgacGGCGGGG-GGCGC-GCa -3' miRNA: 3'- cGCCac-UCGU---UCGUCCCuCCGCGcCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 51054 | 0.66 | 0.709633 |
Target: 5'- aCGGUcGAGCAGGCcaccGAGGCGUucgugcgcgGGCu -3' miRNA: 3'- cGCCA-CUCGUUCGucc-CUCCGCG---------CCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 102849 | 0.66 | 0.709633 |
Target: 5'- cCGGggGGGUguuuuuGGGgGGGGGcggaaauuucGGCGCGGCg -3' miRNA: 3'- cGCCa-CUCG------UUCgUCCCU----------CCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 49046 | 0.66 | 0.709633 |
Target: 5'- cGUGGUG-GCGcGCAGcucacGGccgcGGGCGgCGGCa -3' miRNA: 3'- -CGCCACuCGUuCGUC-----CC----UCCGC-GCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 46774 | 0.66 | 0.708653 |
Target: 5'- cGCGGUaaagaggGGGgGGGgGGGGAGGgcuaCGGCa -3' miRNA: 3'- -CGCCA-------CUCgUUCgUCCCUCCgc--GCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 105047 | 0.66 | 0.708653 |
Target: 5'- cGCGGcgcUGGGCGcgGGCGugugguaguccccGGGcGGCacGCGGCg -3' miRNA: 3'- -CGCC---ACUCGU--UCGU-------------CCCuCCG--CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 2234 | 0.66 | 0.708653 |
Target: 5'- cGCGGcgcUGGGCGcgGGCGugugguaguccccGGGcGGCacGCGGCg -3' miRNA: 3'- -CGCC---ACUCGU--UCGU-------------CCCuCCG--CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 56315 | 0.66 | 0.707672 |
Target: 5'- cGCGGcGGGCGcgcgaaggccguaaaGGCgaAGGGguccacaugcuccgcGGGCGCGGg -3' miRNA: 3'- -CGCCaCUCGU---------------UCG--UCCC---------------UCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 2193 | 0.66 | 0.706691 |
Target: 5'- gGCGGcGuGCGGGCGcaccucaaacaugcGGuaGAGGuCGCGGCc -3' miRNA: 3'- -CGCCaCuCGUUCGU--------------CC--CUCC-GCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 70367 | 0.66 | 0.699804 |
Target: 5'- ----aGAGCGAGgGGGcgccGGGGCGCGaGCu -3' miRNA: 3'- cgccaCUCGUUCgUCC----CUCCGCGC-CG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 34014 | 0.66 | 0.699804 |
Target: 5'- gGCGGUGcugGGCAccgcGCuGGGccAGGCgaugggccccGCGGCg -3' miRNA: 3'- -CGCCAC---UCGUu---CGuCCC--UCCG----------CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 18003 | 0.66 | 0.699804 |
Target: 5'- aGCGucgGGGCuguuGGGCGuGGGGGGCGuuGCg -3' miRNA: 3'- -CGCca-CUCG----UUCGU-CCCUCCGCgcCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 86634 | 0.66 | 0.699804 |
Target: 5'- aGCGuGUGGGCGGGCcGcgccgccccGGAGcGCGCcGCg -3' miRNA: 3'- -CGC-CACUCGUUCGuC---------CCUC-CGCGcCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 14791 | 0.66 | 0.699804 |
Target: 5'- cGCGGcGuacaaaaccGC-AGCGGcGGAGcuGCGCGGCg -3' miRNA: 3'- -CGCCaCu--------CGuUCGUC-CCUC--CGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 125736 | 0.66 | 0.699804 |
Target: 5'- uGgGGUGGGCuGGCuGGGcuGGGCuG-GGCu -3' miRNA: 3'- -CgCCACUCGuUCGuCCC--UCCG-CgCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 11822 | 0.66 | 0.699804 |
Target: 5'- aCGGcacAGCGcGCGGGGGGGgG-GGCg -3' miRNA: 3'- cGCCac-UCGUuCGUCCCUCCgCgCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 107780 | 0.66 | 0.699804 |
Target: 5'- cGCGcccGGGgGGGCAGcuGGGGCuGCGGCg -3' miRNA: 3'- -CGCca-CUCgUUCGUCc-CUCCG-CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 35177 | 0.66 | 0.699804 |
Target: 5'- cCGG-GGGCAcGCGGccuucgaggaGGAGcgcGCGCGGCu -3' miRNA: 3'- cGCCaCUCGUuCGUC----------CCUC---CGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 81244 | 0.66 | 0.699804 |
Target: 5'- gGCGGggccgucGCGAGgAcGGGGGGCccgcccgcccccGCGGCg -3' miRNA: 3'- -CGCCacu----CGUUCgU-CCCUCCG------------CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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