Results 41 - 60 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6662 | 3' | -60.3 | NC_001847.1 | + | 71518 | 0.66 | 0.698818 |
Target: 5'- cGCGGa-GGCAguAGCGGGcgaagggguagcaGAGGCacGCGGCc -3' miRNA: 3'- -CGCCacUCGU--UCGUCC-------------CUCCG--CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 112090 | 0.66 | 0.689921 |
Target: 5'- gGCGGUccGGcGCAAGguGGacuGGCucgaGCGGCg -3' miRNA: 3'- -CGCCA--CU-CGUUCguCCcu-CCG----CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 10127 | 0.66 | 0.689921 |
Target: 5'- aCGGac-GCGuGCuGGGAGGCGCuGCu -3' miRNA: 3'- cGCCacuCGUuCGuCCCUCCGCGcCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 50829 | 0.66 | 0.689921 |
Target: 5'- aCGGggGGGCGcugcccgcGCcGGGGGGCGCuGGUg -3' miRNA: 3'- cGCCa-CUCGUu-------CGuCCCUCCGCG-CCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 44265 | 0.66 | 0.689921 |
Target: 5'- uCGGUGAuuacgGCGaucuaccacaccGGCGGcGcGGCGCGGCg -3' miRNA: 3'- cGCCACU-----CGU------------UCGUCcCuCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 27190 | 0.66 | 0.689921 |
Target: 5'- cGCGGUGGG--GGUGGGGGGGgGgaaGGg -3' miRNA: 3'- -CGCCACUCguUCGUCCCUCCgCg--CCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 120675 | 0.66 | 0.689921 |
Target: 5'- uCGGUGAGCccgGAGacccaGAGGCcGCGGCc -3' miRNA: 3'- cGCCACUCG---UUCgucc-CUCCG-CGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 130003 | 0.66 | 0.689921 |
Target: 5'- cGCGGUGGG--GGUGGGGGGGgGgaaGGg -3' miRNA: 3'- -CGCCACUCguUCGUCCCUCCgCg--CCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 69295 | 0.66 | 0.689921 |
Target: 5'- cGCGGgcguGCGGGCGGaccGGcugccuuuuGGGCGCGGg -3' miRNA: 3'- -CGCCacu-CGUUCGUC---CC---------UCCGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 112940 | 0.66 | 0.689921 |
Target: 5'- aCGGac-GCGuGCuGGGAGGCGCuGCu -3' miRNA: 3'- cGCCacuCGUuCGuCCCUCCGCGcCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 72394 | 0.66 | 0.689921 |
Target: 5'- gGUGGUGGacGCGGGCcccgacgcGGGGAcGGCcaCGGCc -3' miRNA: 3'- -CGCCACU--CGUUCG--------UCCCU-CCGc-GCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 90797 | 0.66 | 0.689921 |
Target: 5'- aGCGG-GAGCGAGagcgagAGcGGAgcgagagcaaaGGCGgGGCg -3' miRNA: 3'- -CGCCaCUCGUUCg-----UC-CCU-----------CCGCgCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 53611 | 0.66 | 0.689921 |
Target: 5'- aCGGUG-GCGGGCGGc--GGgGUGGCa -3' miRNA: 3'- cGCCACuCGUUCGUCccuCCgCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 54695 | 0.66 | 0.679991 |
Target: 5'- gGCGGcGGcGCccGCGGGGAGgacgacGCGCGGg -3' miRNA: 3'- -CGCCaCU-CGuuCGUCCCUC------CGCGCCg -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 14005 | 0.66 | 0.679991 |
Target: 5'- cGCGccgaGAGCAcggcAGCAGGcGGcGGCGCaGCg -3' miRNA: 3'- -CGCca--CUCGU----UCGUCC-CU-CCGCGcCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 62434 | 0.66 | 0.679991 |
Target: 5'- -aGGUGAGCGuGUuuucGucGGCGCGGCu -3' miRNA: 3'- cgCCACUCGUuCGuc--CcuCCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 13308 | 0.66 | 0.678996 |
Target: 5'- cGCGGUcgucgaggcagacGGGCuccGGCAcGGGcGGCGagcaGGCg -3' miRNA: 3'- -CGCCA-------------CUCGu--UCGU-CCCuCCGCg---CCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 125074 | 0.66 | 0.670024 |
Target: 5'- cGCGGcgGGGC--GCuGGGcccGCGCGGCc -3' miRNA: 3'- -CGCCa-CUCGuuCGuCCCuc-CGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 71070 | 0.66 | 0.670024 |
Target: 5'- cCGGUGcuGGCGGcGCucGGccGGCGCGGCc -3' miRNA: 3'- cGCCAC--UCGUU-CGucCCu-CCGCGCCG- -5' |
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6662 | 3' | -60.3 | NC_001847.1 | + | 84230 | 0.66 | 0.670024 |
Target: 5'- aCGGccgGGGCcgccGCgGGGGAGGaggGCGGCg -3' miRNA: 3'- cGCCa--CUCGuu--CG-UCCCUCCg--CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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