miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6664 3' -62.6 NC_001847.1 + 16648 0.65 0.598945
Target:  5'- uGCCgUcGGGGcCCCGCGCCuacaggcgcgcccgGGC-CUUGCg -3'
miRNA:   3'- -CGGgA-CCCU-GGGCGCGG--------------UCGaGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 105320 0.65 0.598945
Target:  5'- cGCgUUGcGGACCUGCGUCgucgugggcgccggGGCgCUCGCg -3'
miRNA:   3'- -CGgGAC-CCUGGGCGCGG--------------UCGaGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 63553 0.66 0.592033
Target:  5'- -gCCUGGG-CCgGCGCCGGgCgg-CACu -3'
miRNA:   3'- cgGGACCCuGGgCGCGGUC-GagaGUG- -5'
6664 3' -62.6 NC_001847.1 + 133572 0.66 0.562588
Target:  5'- cGCgCUGGcGcGCgCCGUGCUGGC-CUCGCg -3'
miRNA:   3'- -CGgGACC-C-UG-GGCGCGGUCGaGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 103567 0.66 0.582182
Target:  5'- cCCCUaGGGcgaggccgGCCCGcCGCCGGCgg-CGCc -3'
miRNA:   3'- cGGGA-CCC--------UGGGC-GCGGUCGagaGUG- -5'
6664 3' -62.6 NC_001847.1 + 16997 0.66 0.572365
Target:  5'- cGCCCcucgGGGACgcagCGCGCCucgcagacGGC-CUCGCc -3'
miRNA:   3'- -CGGGa---CCCUGg---GCGCGG--------UCGaGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 107015 0.66 0.572365
Target:  5'- aGUCCUcGGGCCCaacguCGCCGGC-CUCGg -3'
miRNA:   3'- -CGGGAcCCUGGGc----GCGGUCGaGAGUg -5'
6664 3' -62.6 NC_001847.1 + 13964 0.66 0.552856
Target:  5'- gGCCCgUGGGAgCCCGCcccugGCCGGCaa--GCg -3'
miRNA:   3'- -CGGG-ACCCU-GGGCG-----CGGUCGagagUG- -5'
6664 3' -62.6 NC_001847.1 + 125653 0.66 0.562588
Target:  5'- cGCCCUGGuccACCgGCGCgguccuggguuuCAGCUCUgGg -3'
miRNA:   3'- -CGGGACCc--UGGgCGCG------------GUCGAGAgUg -5'
6664 3' -62.6 NC_001847.1 + 48186 0.66 0.572365
Target:  5'- cGUCCUGcuGugCCGCGCCGGCggC-CAg -3'
miRNA:   3'- -CGGGACc-CugGGCGCGGUCGa-GaGUg -5'
6664 3' -62.6 NC_001847.1 + 123787 0.66 0.552856
Target:  5'- gGCCUcGGGGCCUGCGCggCGGCggcaGCg -3'
miRNA:   3'- -CGGGaCCCUGGGCGCG--GUCGagagUG- -5'
6664 3' -62.6 NC_001847.1 + 135126 0.66 0.592033
Target:  5'- cCCCggggucgcagGGGGCCCGCG-CGGCgcggCGCg -3'
miRNA:   3'- cGGGa---------CCCUGGGCGCgGUCGaga-GUG- -5'
6664 3' -62.6 NC_001847.1 + 38089 0.66 0.562588
Target:  5'- uGCUCcGGGACuuGC-CCAGC-CUgACg -3'
miRNA:   3'- -CGGGaCCCUGggCGcGGUCGaGAgUG- -5'
6664 3' -62.6 NC_001847.1 + 89908 0.66 0.592033
Target:  5'- cGCCCgaGGuuGugCCGCGCgaGGCcgcgCUCGCg -3'
miRNA:   3'- -CGGGa-CC--CugGGCGCGg-UCGa---GAGUG- -5'
6664 3' -62.6 NC_001847.1 + 18741 0.66 0.572365
Target:  5'- gGCCC-GGGGCCCagaGCGCC-GCcgC-CGCg -3'
miRNA:   3'- -CGGGaCCCUGGG---CGCGGuCGa-GaGUG- -5'
6664 3' -62.6 NC_001847.1 + 78128 0.66 0.572365
Target:  5'- cGCCaaaaGcGGGCgCGCGCCGGCcugcggCUCAUa -3'
miRNA:   3'- -CGGga--C-CCUGgGCGCGGUCGa-----GAGUG- -5'
6664 3' -62.6 NC_001847.1 + 47795 0.66 0.592033
Target:  5'- gGCCUcGGcGCCCGCGaUCGGCUC-CAg -3'
miRNA:   3'- -CGGGaCCcUGGGCGC-GGUCGAGaGUg -5'
6664 3' -62.6 NC_001847.1 + 134850 0.66 0.552856
Target:  5'- gGCgCgGGGacggcGCCCGCGCgGGCUCg-GCg -3'
miRNA:   3'- -CGgGaCCC-----UGGGCGCGgUCGAGagUG- -5'
6664 3' -62.6 NC_001847.1 + 107282 0.66 0.572365
Target:  5'- cGUCCUcGGcGCCCcccgcgucccugGCGCCGGCgucCUCGCc -3'
miRNA:   3'- -CGGGA-CCcUGGG------------CGCGGUCGa--GAGUG- -5'
6664 3' -62.6 NC_001847.1 + 108002 0.66 0.592033
Target:  5'- gGCgC-GGGagaaGCCCuCGCCGGCUCUCuCg -3'
miRNA:   3'- -CGgGaCCC----UGGGcGCGGUCGAGAGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.