miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6664 3' -62.6 NC_001847.1 + 104 0.67 0.499446
Target:  5'- cCCCUGGGuccggcgcCCCGCGCCccggccccgcccgcgGGC-CUCGg -3'
miRNA:   3'- cGGGACCCu-------GGGCGCGG---------------UCGaGAGUg -5'
6664 3' -62.6 NC_001847.1 + 219 0.77 0.120661
Target:  5'- cGCCCgGGGGCCCGaGCCcgGGC-CUCGCg -3'
miRNA:   3'- -CGGGaCCCUGGGCgCGG--UCGaGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 261 0.67 0.514492
Target:  5'- cGCCCaGGGGCCCGagcccgggggcCGCCgAGCcCgCGCg -3'
miRNA:   3'- -CGGGaCCCUGGGC-----------GCGG-UCGaGaGUG- -5'
6664 3' -62.6 NC_001847.1 + 363 0.7 0.336412
Target:  5'- cGCCCcGGGGCCCGCcCCGcGCgccgCGCg -3'
miRNA:   3'- -CGGGaCCCUGGGCGcGGU-CGaga-GUG- -5'
6664 3' -62.6 NC_001847.1 + 754 0.66 0.582182
Target:  5'- cCCCUaGGGcgaggccgGCCCGcCGCCGGCgg-CGCc -3'
miRNA:   3'- cGGGA-CCC--------UGGGC-GCGGUCGagaGUG- -5'
6664 3' -62.6 NC_001847.1 + 940 0.7 0.366702
Target:  5'- cGCCCUcGG-CCCGCGCgCGccGCUC-CACg -3'
miRNA:   3'- -CGGGAcCCuGGGCGCG-GU--CGAGaGUG- -5'
6664 3' -62.6 NC_001847.1 + 951 0.69 0.39062
Target:  5'- cGCCCgGGGACgaCUGCGCCGGCa----- -3'
miRNA:   3'- -CGGGaCCCUG--GGCGCGGUCGagagug -5'
6664 3' -62.6 NC_001847.1 + 1663 0.66 0.543175
Target:  5'- uGCCCgacggccGGGCCgucgCGCgGCCAGUUCUCGg -3'
miRNA:   3'- -CGGGac-----CCUGG----GCG-CGGUCGAGAGUg -5'
6664 3' -62.6 NC_001847.1 + 2088 0.73 0.233834
Target:  5'- cGCCCcgcGGGGCCCGCGCggCGGCgggC-CGCg -3'
miRNA:   3'- -CGGGa--CCCUGGGCGCG--GUCGa--GaGUG- -5'
6664 3' -62.6 NC_001847.1 + 2686 0.67 0.523988
Target:  5'- cGUCCUccGGGuccGCCCGCGgcgccCCGGCcCUCAUg -3'
miRNA:   3'- -CGGGA--CCC---UGGGCGC-----GGUCGaGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 3771 0.69 0.415535
Target:  5'- gGCCCUcgcGGGugucGCCCGCGCCgccgaAGCg--CACg -3'
miRNA:   3'- -CGGGA---CCC----UGGGCGCGG-----UCGagaGUG- -5'
6664 3' -62.6 NC_001847.1 + 4001 0.71 0.321966
Target:  5'- gGCCCcgcgGGGcgccggGCCCgGCGCCcGCcUCUCGCg -3'
miRNA:   3'- -CGGGa---CCC------UGGG-CGCGGuCG-AGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 4202 0.66 0.572365
Target:  5'- aGUCCUcGGGCCCaacguCGCCGGC-CUCGg -3'
miRNA:   3'- -CGGGAcCCUGGGc----GCGGUCGaGAGUg -5'
6664 3' -62.6 NC_001847.1 + 4273 0.67 0.514492
Target:  5'- gGCUUUGGcGGCCacgaggcgCGCGCCGGCgccuugguaCUCGCg -3'
miRNA:   3'- -CGGGACC-CUGG--------GCGCGGUCGa--------GAGUG- -5'
6664 3' -62.6 NC_001847.1 + 4469 0.66 0.572365
Target:  5'- cGUCCUcGGcGCCCcccgcgucccugGCGCCGGCgucCUCGCc -3'
miRNA:   3'- -CGGGA-CCcUGGG------------CGCGGUCGa--GAGUG- -5'
6664 3' -62.6 NC_001847.1 + 4535 0.67 0.514492
Target:  5'- cGCCCUcGGuGGCCCccgcgucuccgGCGCCGucguccucgcuGCUCUcCGCg -3'
miRNA:   3'- -CGGGA-CC-CUGGG-----------CGCGGU-----------CGAGA-GUG- -5'
6664 3' -62.6 NC_001847.1 + 5189 0.66 0.592033
Target:  5'- gGCgC-GGGagaaGCCCuCGCCGGCUCUCuCg -3'
miRNA:   3'- -CGgGaCCC----UGGGcGCGGUCGAGAGuG- -5'
6664 3' -62.6 NC_001847.1 + 5584 0.69 0.374562
Target:  5'- -gCCUGGuGGCCgCGCGgUAGCUC-CACu -3'
miRNA:   3'- cgGGACC-CUGG-GCGCgGUCGAGaGUG- -5'
6664 3' -62.6 NC_001847.1 + 8232 1.11 0.000434
Target:  5'- aGCCCUGGGACCCGCGCCAGCUCUCACg -3'
miRNA:   3'- -CGGGACCCUGGGCGCGGUCGAGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 8871 0.67 0.495715
Target:  5'- cGCaauUGGGcCCCagaGCGCCAGCgagucgggCUCACa -3'
miRNA:   3'- -CGgg-ACCCuGGG---CGCGGUCGa-------GAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.