miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6664 3' -62.6 NC_001847.1 + 106814 0.71 0.321966
Target:  5'- gGCCCcgcgGGGcgccggGCCCgGCGCCcGCcUCUCGCg -3'
miRNA:   3'- -CGGGa---CCC------UGGG-CGCGGuCG-AGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 124942 0.72 0.262738
Target:  5'- cGCCCUGGGcCCgGCGgCGGCggcggCGCg -3'
miRNA:   3'- -CGGGACCCuGGgCGCgGUCGaga--GUG- -5'
6664 3' -62.6 NC_001847.1 + 133217 0.72 0.275089
Target:  5'- gGCCCgaguGGcCgCCGCGCCgcggcgGGCUCUCGCa -3'
miRNA:   3'- -CGGGac--CCuG-GGCGCGG------UCGAGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 131153 0.71 0.2879
Target:  5'- cGCCCcgcGGGGCCgCGCGCCcgggcccccGGCgccCUCGCc -3'
miRNA:   3'- -CGGGa--CCCUGG-GCGCGG---------UCGa--GAGUG- -5'
6664 3' -62.6 NC_001847.1 + 112974 0.71 0.307989
Target:  5'- cGCCCgagcaGGccGGCCCgcuGCGCCGGCUUUUGCg -3'
miRNA:   3'- -CGGGa----CC--CUGGG---CGCGGUCGAGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 102206 0.71 0.307989
Target:  5'- cGCCCccccGGcCCCGcCGCCGGC-CUCGCu -3'
miRNA:   3'- -CGGGac--CCuGGGC-GCGGUCGaGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 93000 0.71 0.314919
Target:  5'- cGUCCa--GGCgCCGgGCCAGCUCUCGCc -3'
miRNA:   3'- -CGGGaccCUG-GGCgCGGUCGAGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 132896 0.71 0.314919
Target:  5'- cGCCCgGGGacuaccacacGCCCGCGCcCAGCgC-CGCg -3'
miRNA:   3'- -CGGGaCCC----------UGGGCGCG-GUCGaGaGUG- -5'
6664 3' -62.6 NC_001847.1 + 122837 0.71 0.314919
Target:  5'- cGCCCaccGGGCCCGCGCCcuGGCUUguggUGCu -3'
miRNA:   3'- -CGGGac-CCUGGGCGCGG--UCGAGa---GUG- -5'
6664 3' -62.6 NC_001847.1 + 114726 0.73 0.238832
Target:  5'- cCCCUcgcauccGGGACCgGUGCCGGCggUCGCg -3'
miRNA:   3'- cGGGA-------CCCUGGgCGCGGUCGagAGUG- -5'
6664 3' -62.6 NC_001847.1 + 85130 0.73 0.237714
Target:  5'- cGCCC-GGGGCCCagcaggcggugggcGCGCgGGCuccUCUCGCg -3'
miRNA:   3'- -CGGGaCCCUGGG--------------CGCGgUCG---AGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 104901 0.73 0.233834
Target:  5'- cGCCCcgcGGGGCCCGCGCggCGGCgggC-CGCg -3'
miRNA:   3'- -CGGGa--CCCUGGGCGCG--GUCGa--GaGUG- -5'
6664 3' -62.6 NC_001847.1 + 113355 0.79 0.091149
Target:  5'- gGCCCgGGGACCCGCGCcCGGCcggCGCc -3'
miRNA:   3'- -CGGGaCCCUGGGCGCG-GUCGagaGUG- -5'
6664 3' -62.6 NC_001847.1 + 103032 0.77 0.120661
Target:  5'- cGCCCgGGGGCCCGaGCCcgGGC-CUCGCg -3'
miRNA:   3'- -CGGGaCCCUGGGCgCGG--UCGaGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 74264 0.77 0.13014
Target:  5'- cGCUgCUGGGGCCCGCGCgCGcGCUCgCGCu -3'
miRNA:   3'- -CGG-GACCCUGGGCGCG-GU-CGAGaGUG- -5'
6664 3' -62.6 NC_001847.1 + 19427 0.75 0.166478
Target:  5'- cGCCCgUGGcGGCaagcgcacacgggCCGCaGCCGGCUCUCGCc -3'
miRNA:   3'- -CGGG-ACC-CUG-------------GGCG-CGGUCGAGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 81299 0.75 0.171036
Target:  5'- cCCCUGaccCCCGCGCCGGCUCUUcaGCg -3'
miRNA:   3'- cGGGACccuGGGCGCGGUCGAGAG--UG- -5'
6664 3' -62.6 NC_001847.1 + 25971 0.75 0.17961
Target:  5'- cGCCUUGGGaacaaGCgCGCgGCCGGCUCUgGCu -3'
miRNA:   3'- -CGGGACCC-----UGgGCG-CGGUCGAGAgUG- -5'
6664 3' -62.6 NC_001847.1 + 120737 0.74 0.193185
Target:  5'- aCCCgcugcgagcGGGGCCuCGCGCCAGCUCg-GCg -3'
miRNA:   3'- cGGGa--------CCCUGG-GCGCGGUCGAGagUG- -5'
6664 3' -62.6 NC_001847.1 + 113512 0.73 0.217806
Target:  5'- cGCCCgGGcgcGGCCCGCGCCGGCcaagCGCc -3'
miRNA:   3'- -CGGGaCC---CUGGGCGCGGUCGaga-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.