Results 1 - 20 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6664 | 3' | -62.6 | NC_001847.1 | + | 111045 | 1.11 | 0.000434 |
Target: 5'- aGCCCUGGGACCCGCGCCAGCUCUCACg -3' miRNA: 3'- -CGGGACCCUGGGCGCGGUCGAGAGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 8232 | 1.11 | 0.000434 |
Target: 5'- aGCCCUGGGACCCGCGCCAGCUCUCACg -3' miRNA: 3'- -CGGGACCCUGGGCGCGGUCGAGAGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 93320 | 0.85 | 0.033712 |
Target: 5'- aGCCCUGGGACCCGCGCCGcccGCcCgCGCg -3' miRNA: 3'- -CGGGACCCUGGGCGCGGU---CGaGaGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 127027 | 0.79 | 0.088834 |
Target: 5'- cCCCUGGGGcCCCGCGCCuGCgCUgGCg -3' miRNA: 3'- cGGGACCCU-GGGCGCGGuCGaGAgUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 10542 | 0.79 | 0.091149 |
Target: 5'- gGCCCgGGGACCCGCGCcCGGCcggCGCc -3' miRNA: 3'- -CGGGaCCCUGGGCGCG-GUCGagaGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 113355 | 0.79 | 0.091149 |
Target: 5'- gGCCCgGGGACCCGCGCcCGGCcggCGCc -3' miRNA: 3'- -CGGGaCCCUGGGCGCG-GUCGagaGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 219 | 0.77 | 0.120661 |
Target: 5'- cGCCCgGGGGCCCGaGCCcgGGC-CUCGCg -3' miRNA: 3'- -CGGGaCCCUGGGCgCGG--UCGaGAGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 103032 | 0.77 | 0.120661 |
Target: 5'- cGCCCgGGGGCCCGaGCCcgGGC-CUCGCg -3' miRNA: 3'- -CGGGaCCCUGGGCgCGG--UCGaGAGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 74264 | 0.77 | 0.13014 |
Target: 5'- cGCUgCUGGGGCCCGCGCgCGcGCUCgCGCu -3' miRNA: 3'- -CGG-GACCCUGGGCGCG-GU-CGAGaGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 19427 | 0.75 | 0.166478 |
Target: 5'- cGCCCgUGGcGGCaagcgcacacgggCCGCaGCCGGCUCUCGCc -3' miRNA: 3'- -CGGG-ACC-CUG-------------GGCG-CGGUCGAGAGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 126278 | 0.75 | 0.166888 |
Target: 5'- cGCUCUGGGGCCCaauuGCGCCAGCag-CAa -3' miRNA: 3'- -CGGGACCCUGGG----CGCGGUCGagaGUg -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 81299 | 0.75 | 0.171036 |
Target: 5'- cCCCUGaccCCCGCGCCGGCUCUUcaGCg -3' miRNA: 3'- cGGGACccuGGGCGCGGUCGAGAG--UG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 25971 | 0.75 | 0.17961 |
Target: 5'- cGCCUUGGGaacaaGCgCGCgGCCGGCUCUgGCu -3' miRNA: 3'- -CGGGACCC-----UGgGCG-CGGUCGAGAgUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 97778 | 0.74 | 0.193185 |
Target: 5'- cGCCg-GGGAUgagaCGCGCCAGCUCcgCACg -3' miRNA: 3'- -CGGgaCCCUGg---GCGCGGUCGAGa-GUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 120737 | 0.74 | 0.193185 |
Target: 5'- aCCCgcugcgagcGGGGCCuCGCGCCAGCUCg-GCg -3' miRNA: 3'- cGGGa--------CCCUGG-GCGCGGUCGAGagUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 10699 | 0.73 | 0.217806 |
Target: 5'- cGCCCgGGcgcGGCCCGCGCCGGCcaagCGCc -3' miRNA: 3'- -CGGGaCC---CUGGGCGCGGUCGaga-GUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 113512 | 0.73 | 0.217806 |
Target: 5'- cGCCCgGGcgcGGCCCGCGCCGGCcaagCGCc -3' miRNA: 3'- -CGGGaCC---CUGGGCGCGGUCGaga-GUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 18399 | 0.73 | 0.233834 |
Target: 5'- cGCCCUGcGGGCCCGCGg-GGCUgUCGa -3' miRNA: 3'- -CGGGAC-CCUGGGCGCggUCGAgAGUg -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 2088 | 0.73 | 0.233834 |
Target: 5'- cGCCCcgcGGGGCCCGCGCggCGGCgggC-CGCg -3' miRNA: 3'- -CGGGa--CCCUGGGCGCG--GUCGa--GaGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 104901 | 0.73 | 0.233834 |
Target: 5'- cGCCCcgcGGGGCCCGCGCggCGGCgggC-CGCg -3' miRNA: 3'- -CGGGa--CCCUGGGCGCG--GUCGa--GaGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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