miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6664 3' -62.6 NC_001847.1 + 135126 0.66 0.592033
Target:  5'- cCCCggggucgcagGGGGCCCGCG-CGGCgcggCGCg -3'
miRNA:   3'- cGGGa---------CCCUGGGCGCgGUCGaga-GUG- -5'
6664 3' -62.6 NC_001847.1 + 134850 0.66 0.552856
Target:  5'- gGCgCgGGGacggcGCCCGCGCgGGCUCg-GCg -3'
miRNA:   3'- -CGgGaCCC-----UGGGCGCGgUCGAGagUG- -5'
6664 3' -62.6 NC_001847.1 + 133572 0.66 0.562588
Target:  5'- cGCgCUGGcGcGCgCCGUGCUGGC-CUCGCg -3'
miRNA:   3'- -CGgGACC-C-UG-GGCGCGGUCGaGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 133363 0.67 0.486444
Target:  5'- uCCCcGGGACCUGCgugGCgGGC-CUCAUc -3'
miRNA:   3'- cGGGaCCCUGGGCG---CGgUCGaGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 133217 0.72 0.275089
Target:  5'- gGCCCgaguGGcCgCCGCGCCgcggcgGGCUCUCGCa -3'
miRNA:   3'- -CGGGac--CCuG-GGCGCGG------UCGAGAGUG- -5'
6664 3' -62.6 NC_001847.1 + 133210 0.68 0.450223
Target:  5'- aGCUCUGcG-CCgCGCGCCGGCUaagcCUCGCc -3'
miRNA:   3'- -CGGGACcCuGG-GCGCGGUCGA----GAGUG- -5'
6664 3' -62.6 NC_001847.1 + 132998 0.67 0.514492
Target:  5'- aGCCCUGGcGCCCgGCGCUcGCcUUCGa -3'
miRNA:   3'- -CGGGACCcUGGG-CGCGGuCGaGAGUg -5'
6664 3' -62.6 NC_001847.1 + 132896 0.71 0.314919
Target:  5'- cGCCCgGGGacuaccacacGCCCGCGCcCAGCgC-CGCg -3'
miRNA:   3'- -CGGGaCCC----------UGGGCGCG-GUCGaGaGUG- -5'
6664 3' -62.6 NC_001847.1 + 132364 0.69 0.427491
Target:  5'- gGCCCUGGaGgccgccggcgggggcGCCgGCGCCGGCgccgC-CGCg -3'
miRNA:   3'- -CGGGACC-C---------------UGGgCGCGGUCGa---GaGUG- -5'
6664 3' -62.6 NC_001847.1 + 131153 0.71 0.2879
Target:  5'- cGCCCcgcGGGGCCgCGCGCCcgggcccccGGCgccCUCGCc -3'
miRNA:   3'- -CGGGa--CCCUGG-GCGCGG---------UCGa--GAGUG- -5'
6664 3' -62.6 NC_001847.1 + 131137 0.7 0.354364
Target:  5'- uGCUCggGGGGCggacuguuaacuuggCCGCGCUGGCgcugCUCACg -3'
miRNA:   3'- -CGGGa-CCCUG---------------GGCGCGGUCGa---GAGUG- -5'
6664 3' -62.6 NC_001847.1 + 127027 0.79 0.088834
Target:  5'- cCCCUGGGGcCCCGCGCCuGCgCUgGCg -3'
miRNA:   3'- cGGGACCCU-GGGCGCGGuCGaGAgUG- -5'
6664 3' -62.6 NC_001847.1 + 126533 0.69 0.407122
Target:  5'- cCCCggcGGGGCuuGCGCUgcGGCUgacgCUCGCg -3'
miRNA:   3'- cGGGa--CCCUGggCGCGG--UCGA----GAGUG- -5'
6664 3' -62.6 NC_001847.1 + 126278 0.75 0.166888
Target:  5'- cGCUCUGGGGCCCaauuGCGCCAGCag-CAa -3'
miRNA:   3'- -CGGGACCCUGGG----CGCGGUCGagaGUg -5'
6664 3' -62.6 NC_001847.1 + 125653 0.66 0.562588
Target:  5'- cGCCCUGGuccACCgGCGCgguccuggguuuCAGCUCUgGg -3'
miRNA:   3'- -CGGGACCc--UGGgCGCG------------GUCGAGAgUg -5'
6664 3' -62.6 NC_001847.1 + 124942 0.72 0.262738
Target:  5'- cGCCCUGGGcCCgGCGgCGGCggcggCGCg -3'
miRNA:   3'- -CGGGACCCuGGgCGCgGUCGaga--GUG- -5'
6664 3' -62.6 NC_001847.1 + 124278 0.7 0.358956
Target:  5'- -gCCUGGGcGCCCGCGCCcGC-CgCGCc -3'
miRNA:   3'- cgGGACCC-UGGGCGCGGuCGaGaGUG- -5'
6664 3' -62.6 NC_001847.1 + 123787 0.66 0.552856
Target:  5'- gGCCUcGGGGCCUGCGCggCGGCggcaGCg -3'
miRNA:   3'- -CGGGaCCCUGGGCGCG--GUCGagagUG- -5'
6664 3' -62.6 NC_001847.1 + 122837 0.71 0.314919
Target:  5'- cGCCCaccGGGCCCGCGCCcuGGCUUguggUGCu -3'
miRNA:   3'- -CGGGac-CCUGGGCGCGG--UCGAGa---GUG- -5'
6664 3' -62.6 NC_001847.1 + 120737 0.74 0.193185
Target:  5'- aCCCgcugcgagcGGGGCCuCGCGCCAGCUCg-GCg -3'
miRNA:   3'- cGGGa--------CCCUGG-GCGCGGUCGAGagUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.