Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6664 | 5' | -53.3 | NC_001847.1 | + | 111079 | 1.1 | 0.003798 |
Target: 5'- cCCGUGAGAACGCUGGCAGAAUGCCAGc -3' miRNA: 3'- -GGCACUCUUGCGACCGUCUUACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 8266 | 1.1 | 0.003798 |
Target: 5'- cCCGUGAGAACGCUGGCAGAAUGCCAGc -3' miRNA: 3'- -GGCACUCUUGCGACCGUCUUACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 126621 | 0.97 | 0.028472 |
Target: 5'- aCGUGAGAACaCUGGCAGAAUGCCAGg -3' miRNA: 3'- gGCACUCUUGcGACCGUCUUACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 23808 | 0.97 | 0.028472 |
Target: 5'- aCGUGAGAACaCUGGCAGAAUGCCAGg -3' miRNA: 3'- gGCACUCUUGcGACCGUCUUACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 42170 | 0.78 | 0.385974 |
Target: 5'- gCCG-GcGggUGCUGGCGGAAUGCgAGg -3' miRNA: 3'- -GGCaCuCuuGCGACCGUCUUACGgUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 31813 | 0.77 | 0.439454 |
Target: 5'- gCgGUGGGcGGCGCgggGGCAGAGUGCgAGg -3' miRNA: 3'- -GgCACUC-UUGCGa--CCGUCUUACGgUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 82304 | 0.77 | 0.439454 |
Target: 5'- aCCGgggcggGAGAAUGCgGGCGGggUcGCCGGc -3' miRNA: 3'- -GGCa-----CUCUUGCGaCCGUCuuA-CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 24051 | 0.76 | 0.51682 |
Target: 5'- uUGUGcGAACGCUGGCAuucUGCCAGc -3' miRNA: 3'- gGCACuCUUGCGACCGUcuuACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 126864 | 0.76 | 0.51682 |
Target: 5'- uUGUGcGAACGCUGGCAuucUGCCAGc -3' miRNA: 3'- gGCACuCUUGCGACCGUcuuACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 42004 | 0.74 | 0.599081 |
Target: 5'- cCCGcgGGGGGCGCcGGCAGcccgGCCAGc -3' miRNA: 3'- -GGCa-CUCUUGCGaCCGUCuua-CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 28949 | 0.73 | 0.651542 |
Target: 5'- gCCGUGGaGACGCUGGCcgcggcGGggUuuacGCCGGg -3' miRNA: 3'- -GGCACUcUUGCGACCG------UCuuA----CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 4195 | 0.72 | 0.72098 |
Target: 5'- cCCGUGGGccgcGCGCaGGCAGccaaagcccugcgcGGUGCCGGc -3' miRNA: 3'- -GGCACUCu---UGCGaCCGUC--------------UUACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 65539 | 0.71 | 0.783031 |
Target: 5'- aCCGaGGGGGCGCUcGCGGAcgGCUAc -3' miRNA: 3'- -GGCaCUCUUGCGAcCGUCUuaCGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 16352 | 0.71 | 0.773497 |
Target: 5'- cCUG-GAG-GCGCUGGCGGc-UGCCGGu -3' miRNA: 3'- -GGCaCUCuUGCGACCGUCuuACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 102678 | 0.71 | 0.783031 |
Target: 5'- aUGUGAuGAacGCGCUGGCGGGcguGUGCUg- -3' miRNA: 3'- gGCACU-CU--UGCGACCGUCU---UACGGuc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 126906 | 0.7 | 0.810742 |
Target: 5'- gUCGUGAGA--GCUGGCGcGggUcCCAGg -3' miRNA: 3'- -GGCACUCUugCGACCGU-CuuAcGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 128118 | 0.7 | 0.801663 |
Target: 5'- aCGUGGcgcuGGCGCUGGCGGAugcgcgGCCGc -3' miRNA: 3'- gGCACUc---UUGCGACCGUCUua----CGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 24093 | 0.7 | 0.810742 |
Target: 5'- gUCGUGAGA--GCUGGCGcGggUcCCAGg -3' miRNA: 3'- -GGCACUCUugCGACCGU-CuuAcGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 5312 | 0.7 | 0.819649 |
Target: 5'- aCGgcGAGggUcCUGGCAGAagGCCGGc -3' miRNA: 3'- gGCa-CUCuuGcGACCGUCUuaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 30358 | 0.7 | 0.836917 |
Target: 5'- cCCG-GGGAgGCGCUGGCGGc--GCCGc -3' miRNA: 3'- -GGCaCUCU-UGCGACCGUCuuaCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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