Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6664 | 5' | -53.3 | NC_001847.1 | + | 71213 | 0.67 | 0.942932 |
Target: 5'- cCCGcGGccGCGCUGGguGAuggaguGUGCCAu -3' miRNA: 3'- -GGCaCUcuUGCGACCguCU------UACGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 70274 | 0.69 | 0.87653 |
Target: 5'- aCCGcGAGGACGCgcgccUGGCGGggUcgcggcgcGCCGc -3' miRNA: 3'- -GGCaCUCUUGCG-----ACCGUCuuA--------CGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 54582 | 0.69 | 0.881635 |
Target: 5'- cCCGcgggcUGGGcGGCGCUGGCGGcgcgcgcccgcgccGAUGCCGa -3' miRNA: 3'- -GGC-----ACUC-UUGCGACCGUC--------------UUACGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 103354 | 0.68 | 0.897594 |
Target: 5'- cCCGacgcgGGGAACGUggcGGCGGAc-GCCAGc -3' miRNA: 3'- -GGCa----CUCUUGCGa--CCGUCUuaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 67769 | 0.68 | 0.910428 |
Target: 5'- -aGUGcGaAGCGCUGGCAGAA-GCUg- -3' miRNA: 3'- ggCACuC-UUGCGACCGUCUUaCGGuc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 59551 | 0.68 | 0.916473 |
Target: 5'- gCgGUGGGGGCgGCgggGGCGG--UGCCGGc -3' miRNA: 3'- -GgCACUCUUG-CGa--CCGUCuuACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 102671 | 0.67 | 0.927811 |
Target: 5'- gCCGcGAGGGCgggggggcgggGCgggGGCAGGGcGCCGGg -3' miRNA: 3'- -GGCaCUCUUG-----------CGa--CCGUCUUaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 51369 | 0.67 | 0.933102 |
Target: 5'- aCCGUGAcgguGACGCUcGCGGAG-GCCGc -3' miRNA: 3'- -GGCACUc---UUGCGAcCGUCUUaCGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 74955 | 0.67 | 0.942464 |
Target: 5'- gCCGUuuauuuguuuauuGGGGACaGCgacggGGCGGGGcGCCAGg -3' miRNA: 3'- -GGCA-------------CUCUUG-CGa----CCGUCUUaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 16809 | 0.69 | 0.845262 |
Target: 5'- gUCGcgGAGAACuCgGGCAGcGGUGCCGGg -3' miRNA: 3'- -GGCa-CUCUUGcGaCCGUC-UUACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 133171 | 0.7 | 0.836917 |
Target: 5'- cCCG-GGGAgGCGCUGGCGGc--GCCGc -3' miRNA: 3'- -GGCaCUCU-UGCGACCGUCuuaCGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 108125 | 0.7 | 0.819649 |
Target: 5'- aCGgcGAGggUcCUGGCAGAagGCCGGc -3' miRNA: 3'- gGCa-CUCuuGcGACCGUCUuaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 126621 | 0.97 | 0.028472 |
Target: 5'- aCGUGAGAACaCUGGCAGAAUGCCAGg -3' miRNA: 3'- gGCACUCUUGcGACCGUCUUACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 31813 | 0.77 | 0.439454 |
Target: 5'- gCgGUGGGcGGCGCgggGGCAGAGUGCgAGg -3' miRNA: 3'- -GgCACUC-UUGCGa--CCGUCUUACGgUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 126864 | 0.76 | 0.51682 |
Target: 5'- uUGUGcGAACGCUGGCAuucUGCCAGc -3' miRNA: 3'- gGCACuCUUGCGACCGUcuuACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 28949 | 0.73 | 0.651542 |
Target: 5'- gCCGUGGaGACGCUGGCcgcggcGGggUuuacGCCGGg -3' miRNA: 3'- -GGCACUcUUGCGACCG------UCuuA----CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 4195 | 0.72 | 0.72098 |
Target: 5'- cCCGUGGGccgcGCGCaGGCAGccaaagcccugcgcGGUGCCGGc -3' miRNA: 3'- -GGCACUCu---UGCGaCCGUC--------------UUACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 16352 | 0.71 | 0.773497 |
Target: 5'- cCUG-GAG-GCGCUGGCGGc-UGCCGGu -3' miRNA: 3'- -GGCaCUCuUGCGACCGUCuuACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 65539 | 0.71 | 0.783031 |
Target: 5'- aCCGaGGGGGCGCUcGCGGAcgGCUAc -3' miRNA: 3'- -GGCaCUCUUGCGAcCGUCUuaCGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 126906 | 0.7 | 0.810742 |
Target: 5'- gUCGUGAGA--GCUGGCGcGggUcCCAGg -3' miRNA: 3'- -GGCACUCUugCGACCGU-CuuAcGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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