Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6664 | 5' | -53.3 | NC_001847.1 | + | 28949 | 0.73 | 0.651542 |
Target: 5'- gCCGUGGaGACGCUGGCcgcggcGGggUuuacGCCGGg -3' miRNA: 3'- -GGCACUcUUGCGACCG------UCuuA----CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 4195 | 0.72 | 0.72098 |
Target: 5'- cCCGUGGGccgcGCGCaGGCAGccaaagcccugcgcGGUGCCGGc -3' miRNA: 3'- -GGCACUCu---UGCGaCCGUC--------------UUACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 16352 | 0.71 | 0.773497 |
Target: 5'- cCUG-GAG-GCGCUGGCGGc-UGCCGGu -3' miRNA: 3'- -GGCaCUCuUGCGACCGUCuuACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 65539 | 0.71 | 0.783031 |
Target: 5'- aCCGaGGGGGCGCUcGCGGAcgGCUAc -3' miRNA: 3'- -GGCaCUCUUGCGAcCGUCUuaCGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 70274 | 0.69 | 0.87653 |
Target: 5'- aCCGcGAGGACGCgcgccUGGCGGggUcgcggcgcGCCGc -3' miRNA: 3'- -GGCaCUCUUGCG-----ACCGUCuuA--------CGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 16809 | 0.69 | 0.845262 |
Target: 5'- gUCGcgGAGAACuCgGGCAGcGGUGCCGGg -3' miRNA: 3'- -GGCa-CUCUUGcGaCCGUC-UUACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 133171 | 0.7 | 0.836917 |
Target: 5'- cCCG-GGGAgGCGCUGGCGGc--GCCGc -3' miRNA: 3'- -GGCaCUCU-UGCGACCGUCuuaCGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 108125 | 0.7 | 0.819649 |
Target: 5'- aCGgcGAGggUcCUGGCAGAagGCCGGc -3' miRNA: 3'- gGCa-CUCuuGcGACCGUCUuaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 126906 | 0.7 | 0.810742 |
Target: 5'- gUCGUGAGA--GCUGGCGcGggUcCCAGg -3' miRNA: 3'- -GGCACUCUugCGACCGU-CuuAcGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 95508 | 0.68 | 0.904134 |
Target: 5'- cCCGUGGGc---CUGGCGGGcgcGCCAGg -3' miRNA: 3'- -GGCACUCuugcGACCGUCUua-CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 33218 | 0.68 | 0.916473 |
Target: 5'- aCGUGAuggcGAUGCUGGCcGAGUGCg-- -3' miRNA: 3'- gGCACUc---UUGCGACCGuCUUACGguc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 41534 | 0.67 | 0.922268 |
Target: 5'- gCCGgccgGAGcaccugGGCGaUGGCAGAGUGCgAGc -3' miRNA: 3'- -GGCa---CUC------UUGCgACCGUCUUACGgUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 74168 | 0.66 | 0.947474 |
Target: 5'- gCCGUGGGcGCGCgcaGCGGGGacGCCAa -3' miRNA: 3'- -GGCACUCuUGCGac-CGUCUUa-CGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 32928 | 0.66 | 0.955824 |
Target: 5'- aCGgGAGGAgGCcGGCGGcgggGCCGGg -3' miRNA: 3'- gGCaCUCUUgCGaCCGUCuua-CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 76165 | 0.66 | 0.95964 |
Target: 5'- gCCGUGuccuCGCUGcaGCAGGAggugaGCCAGc -3' miRNA: 3'- -GGCACucuuGCGAC--CGUCUUa----CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 1374 | 0.66 | 0.95964 |
Target: 5'- cCCGUc-GAGCGCcGGCAGcacgcgcUGCCGGu -3' miRNA: 3'- -GGCAcuCUUGCGaCCGUCuu-----ACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 50848 | 0.66 | 0.963223 |
Target: 5'- gCCG-GGGGGCGCUGGU-GAugacGUCGGa -3' miRNA: 3'- -GGCaCUCUUGCGACCGuCUua--CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 97624 | 0.66 | 0.963223 |
Target: 5'- aCCGUcGAGggUGCguccaGGCGGcgcGCCAa -3' miRNA: 3'- -GGCA-CUCuuGCGa----CCGUCuuaCGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 19512 | 0.66 | 0.966578 |
Target: 5'- gUCGcGGGAucGCGCUugcGGCAGAAacggcaGCCGGa -3' miRNA: 3'- -GGCaCUCU--UGCGA---CCGUCUUa-----CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 8266 | 1.1 | 0.003798 |
Target: 5'- cCCGUGAGAACGCUGGCAGAAUGCCAGc -3' miRNA: 3'- -GGCACUCUUGCGACCGUCUUACGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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