miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6664 5' -53.3 NC_001847.1 + 33218 0.68 0.916473
Target:  5'- aCGUGAuggcGAUGCUGGCcGAGUGCg-- -3'
miRNA:   3'- gGCACUc---UUGCGACCGuCUUACGguc -5'
6664 5' -53.3 NC_001847.1 + 41534 0.67 0.922268
Target:  5'- gCCGgccgGAGcaccugGGCGaUGGCAGAGUGCgAGc -3'
miRNA:   3'- -GGCa---CUC------UUGCgACCGUCUUACGgUC- -5'
6664 5' -53.3 NC_001847.1 + 42004 0.74 0.599081
Target:  5'- cCCGcgGGGGGCGCcGGCAGcccgGCCAGc -3'
miRNA:   3'- -GGCa-CUCUUGCGaCCGUCuua-CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 42170 0.78 0.385974
Target:  5'- gCCG-GcGggUGCUGGCGGAAUGCgAGg -3'
miRNA:   3'- -GGCaCuCuuGCGACCGUCUUACGgUC- -5'
6664 5' -53.3 NC_001847.1 + 49394 0.66 0.966578
Target:  5'- aCCGgccUGGGuGGCGCggGGCuGAcgGCCAa -3'
miRNA:   3'- -GGC---ACUC-UUGCGa-CCGuCUuaCGGUc -5'
6664 5' -53.3 NC_001847.1 + 50848 0.66 0.963223
Target:  5'- gCCG-GGGGGCGCUGGU-GAugacGUCGGa -3'
miRNA:   3'- -GGCaCUCUUGCGACCGuCUua--CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 51369 0.67 0.933102
Target:  5'- aCCGUGAcgguGACGCUcGCGGAG-GCCGc -3'
miRNA:   3'- -GGCACUc---UUGCGAcCGUCUUaCGGUc -5'
6664 5' -53.3 NC_001847.1 + 54536 0.66 0.95964
Target:  5'- gCCGUccGGGGGCGCagacGGCGGGGgcgGCgCGGa -3'
miRNA:   3'- -GGCA--CUCUUGCGa---CCGUCUUa--CG-GUC- -5'
6664 5' -53.3 NC_001847.1 + 54582 0.69 0.881635
Target:  5'- cCCGcgggcUGGGcGGCGCUGGCGGcgcgcgcccgcgccGAUGCCGa -3'
miRNA:   3'- -GGC-----ACUC-UUGCGACCGUC--------------UUACGGUc -5'
6664 5' -53.3 NC_001847.1 + 59551 0.68 0.916473
Target:  5'- gCgGUGGGGGCgGCgggGGCGG--UGCCGGc -3'
miRNA:   3'- -GgCACUCUUG-CGa--CCGUCuuACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 65539 0.71 0.783031
Target:  5'- aCCGaGGGGGCGCUcGCGGAcgGCUAc -3'
miRNA:   3'- -GGCaCUCUUGCGAcCGUCUuaCGGUc -5'
6664 5' -53.3 NC_001847.1 + 67769 0.68 0.910428
Target:  5'- -aGUGcGaAGCGCUGGCAGAA-GCUg- -3'
miRNA:   3'- ggCACuC-UUGCGACCGUCUUaCGGuc -5'
6664 5' -53.3 NC_001847.1 + 70274 0.69 0.87653
Target:  5'- aCCGcGAGGACGCgcgccUGGCGGggUcgcggcgcGCCGc -3'
miRNA:   3'- -GGCaCUCUUGCG-----ACCGUCuuA--------CGGUc -5'
6664 5' -53.3 NC_001847.1 + 71213 0.67 0.942932
Target:  5'- cCCGcGGccGCGCUGGguGAuggaguGUGCCAu -3'
miRNA:   3'- -GGCaCUcuUGCGACCguCU------UACGGUc -5'
6664 5' -53.3 NC_001847.1 + 74168 0.66 0.947474
Target:  5'- gCCGUGGGcGCGCgcaGCGGGGacGCCAa -3'
miRNA:   3'- -GGCACUCuUGCGac-CGUCUUa-CGGUc -5'
6664 5' -53.3 NC_001847.1 + 74955 0.67 0.942464
Target:  5'- gCCGUuuauuuguuuauuGGGGACaGCgacggGGCGGGGcGCCAGg -3'
miRNA:   3'- -GGCA-------------CUCUUG-CGa----CCGUCUUaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 76165 0.66 0.95964
Target:  5'- gCCGUGuccuCGCUGcaGCAGGAggugaGCCAGc -3'
miRNA:   3'- -GGCACucuuGCGAC--CGUCUUa----CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 82304 0.77 0.439454
Target:  5'- aCCGgggcggGAGAAUGCgGGCGGggUcGCCGGc -3'
miRNA:   3'- -GGCa-----CUCUUGCGaCCGUCuuA-CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 94353 0.69 0.869043
Target:  5'- aCGagGAGGACGCUGGCGcGGcgGCg-- -3'
miRNA:   3'- gGCa-CUCUUGCGACCGU-CUuaCGguc -5'
6664 5' -53.3 NC_001847.1 + 95508 0.68 0.904134
Target:  5'- cCCGUGGGc---CUGGCGGGcgcGCCAGg -3'
miRNA:   3'- -GGCACUCuugcGACCGUCUua-CGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.