miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6664 5' -53.3 NC_001847.1 + 541 0.68 0.897594
Target:  5'- cCCGacgcgGGGAACGUggcGGCGGAc-GCCAGc -3'
miRNA:   3'- -GGCa----CUCUUGCGa--CCGUCUuaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 1374 0.66 0.95964
Target:  5'- cCCGUc-GAGCGCcGGCAGcacgcgcUGCCGGu -3'
miRNA:   3'- -GGCAcuCUUGCGaCCGUCuu-----ACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 4195 0.72 0.72098
Target:  5'- cCCGUGGGccgcGCGCaGGCAGccaaagcccugcgcGGUGCCGGc -3'
miRNA:   3'- -GGCACUCu---UGCGaCCGUC--------------UUACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 5312 0.7 0.819649
Target:  5'- aCGgcGAGggUcCUGGCAGAagGCCGGc -3'
miRNA:   3'- gGCa-CUCuuGcGACCGUCUuaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 7398 0.66 0.963223
Target:  5'- aCGUG-GcGCGCUcGGCAGAcgGCa-- -3'
miRNA:   3'- gGCACuCuUGCGA-CCGUCUuaCGguc -5'
6664 5' -53.3 NC_001847.1 + 8266 1.1 0.003798
Target:  5'- cCCGUGAGAACGCUGGCAGAAUGCCAGc -3'
miRNA:   3'- -GGCACUCUUGCGACCGUCUUACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 9915 0.66 0.947474
Target:  5'- gCCGccGAGuACGCccGGCAGGcggcUGCCAGc -3'
miRNA:   3'- -GGCa-CUCuUGCGa-CCGUCUu---ACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 16352 0.71 0.773497
Target:  5'- cCUG-GAG-GCGCUGGCGGc-UGCCGGu -3'
miRNA:   3'- -GGCaCUCuUGCGACCGUCuuACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 16809 0.69 0.845262
Target:  5'- gUCGcgGAGAACuCgGGCAGcGGUGCCGGg -3'
miRNA:   3'- -GGCa-CUCUUGcGaCCGUC-UUACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 19512 0.66 0.966578
Target:  5'- gUCGcGGGAucGCGCUugcGGCAGAAacggcaGCCGGa -3'
miRNA:   3'- -GGCaCUCU--UGCGA---CCGUCUUa-----CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 23808 0.97 0.028472
Target:  5'- aCGUGAGAACaCUGGCAGAAUGCCAGg -3'
miRNA:   3'- gGCACUCUUGcGACCGUCUUACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 24051 0.76 0.51682
Target:  5'- uUGUGcGAACGCUGGCAuucUGCCAGc -3'
miRNA:   3'- gGCACuCUUGCGACCGUcuuACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 24093 0.7 0.810742
Target:  5'- gUCGUGAGA--GCUGGCGcGggUcCCAGg -3'
miRNA:   3'- -GGCACUCUugCGACCGU-CuuAcGGUC- -5'
6664 5' -53.3 NC_001847.1 + 24191 0.66 0.955824
Target:  5'- gCGUG---GCGCUGGUggccauGAcgGCCAGg -3'
miRNA:   3'- gGCACucuUGCGACCGu-----CUuaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 28949 0.73 0.651542
Target:  5'- gCCGUGGaGACGCUGGCcgcggcGGggUuuacGCCGGg -3'
miRNA:   3'- -GGCACUcUUGCGACCG------UCuuA----CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 29076 0.66 0.955824
Target:  5'- gCGUGGcGGugGCgGGCGGcGUGCUg- -3'
miRNA:   3'- gGCACU-CUugCGaCCGUCuUACGGuc -5'
6664 5' -53.3 NC_001847.1 + 30358 0.7 0.836917
Target:  5'- cCCG-GGGAgGCGCUGGCGGc--GCCGc -3'
miRNA:   3'- -GGCaCUCU-UGCGACCGUCuuaCGGUc -5'
6664 5' -53.3 NC_001847.1 + 31813 0.77 0.439454
Target:  5'- gCgGUGGGcGGCGCgggGGCAGAGUGCgAGg -3'
miRNA:   3'- -GgCACUC-UUGCGa--CCGUCUUACGgUC- -5'
6664 5' -53.3 NC_001847.1 + 32928 0.66 0.955824
Target:  5'- aCGgGAGGAgGCcGGCGGcgggGCCGGg -3'
miRNA:   3'- gGCaCUCUUgCGaCCGUCuua-CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 32968 0.66 0.966578
Target:  5'- gCCGggGAGGccagagGCGCcggggcgGGCAGGGcgGCCGGa -3'
miRNA:   3'- -GGCa-CUCU------UGCGa------CCGUCUUa-CGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.