Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6664 | 5' | -53.3 | NC_001847.1 | + | 133171 | 0.7 | 0.836917 |
Target: 5'- cCCG-GGGAgGCGCUGGCGGc--GCCGc -3' miRNA: 3'- -GGCaCUCU-UGCGACCGUCuuaCGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 128118 | 0.7 | 0.801663 |
Target: 5'- aCGUGGcgcuGGCGCUGGCGGAugcgcgGCCGc -3' miRNA: 3'- gGCACUc---UUGCGACCGUCUua----CGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 126906 | 0.7 | 0.810742 |
Target: 5'- gUCGUGAGA--GCUGGCGcGggUcCCAGg -3' miRNA: 3'- -GGCACUCUugCGACCGU-CuuAcGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 126864 | 0.76 | 0.51682 |
Target: 5'- uUGUGcGAACGCUGGCAuucUGCCAGc -3' miRNA: 3'- gGCACuCUUGCGACCGUcuuACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 126621 | 0.97 | 0.028472 |
Target: 5'- aCGUGAGAACaCUGGCAGAAUGCCAGg -3' miRNA: 3'- gGCACUCUUGcGACCGUCUUACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 125209 | 0.68 | 0.890811 |
Target: 5'- ---cGAGucccaGACGCUGGCAGccgccUGCCGGg -3' miRNA: 3'- ggcaCUC-----UUGCGACCGUCuu---ACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 111079 | 1.1 | 0.003798 |
Target: 5'- cCCGUGAGAACGCUGGCAGAAUGCCAGc -3' miRNA: 3'- -GGCACUCUUGCGACCGUCUUACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 108626 | 0.68 | 0.897594 |
Target: 5'- uCCGgGGGAcggcgggcgACGCU-GCAGAAgugGCCGGg -3' miRNA: 3'- -GGCaCUCU---------UGCGAcCGUCUUa--CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 108125 | 0.7 | 0.819649 |
Target: 5'- aCGgcGAGggUcCUGGCAGAagGCCGGc -3' miRNA: 3'- gGCa-CUCuuGcGACCGUCUuaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 104187 | 0.66 | 0.95964 |
Target: 5'- cCCGUc-GAGCGCcGGCAGcacgcgcUGCCGGu -3' miRNA: 3'- -GGCAcuCUUGCGaCCGUCuu-----ACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 103354 | 0.68 | 0.897594 |
Target: 5'- cCCGacgcgGGGAACGUggcGGCGGAc-GCCAGc -3' miRNA: 3'- -GGCa----CUCUUGCGa--CCGUCUuaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 102678 | 0.71 | 0.783031 |
Target: 5'- aUGUGAuGAacGCGCUGGCGGGcguGUGCUg- -3' miRNA: 3'- gGCACU-CU--UGCGACCGUCU---UACGGuc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 102671 | 0.67 | 0.927811 |
Target: 5'- gCCGcGAGGGCgggggggcgggGCgggGGCAGGGcGCCGGg -3' miRNA: 3'- -GGCaCUCUUG-----------CGa--CCGUCUUaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 101134 | 0.66 | 0.966578 |
Target: 5'- aCUGUgGAGAuggGCGCgggGGCuGGG-GCCGGg -3' miRNA: 3'- -GGCA-CUCU---UGCGa--CCGuCUUaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 97624 | 0.66 | 0.963223 |
Target: 5'- aCCGUcGAGggUGCguccaGGCGGcgcGCCAa -3' miRNA: 3'- -GGCA-CUCuuGCGa----CCGUCuuaCGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 95939 | 0.68 | 0.890811 |
Target: 5'- cCCGgcgccGGAACGCUGGCGGGcgaGCguGa -3' miRNA: 3'- -GGCac---UCUUGCGACCGUCUua-CGguC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 95508 | 0.68 | 0.904134 |
Target: 5'- cCCGUGGGc---CUGGCGGGcgcGCCAGg -3' miRNA: 3'- -GGCACUCuugcGACCGUCUua-CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 94353 | 0.69 | 0.869043 |
Target: 5'- aCGagGAGGACGCUGGCGcGGcgGCg-- -3' miRNA: 3'- gGCa-CUCUUGCGACCGU-CUuaCGguc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 82304 | 0.77 | 0.439454 |
Target: 5'- aCCGgggcggGAGAAUGCgGGCGGggUcGCCGGc -3' miRNA: 3'- -GGCa-----CUCUUGCGaCCGUCuuA-CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 76165 | 0.66 | 0.95964 |
Target: 5'- gCCGUGuccuCGCUGcaGCAGGAggugaGCCAGc -3' miRNA: 3'- -GGCACucuuGCGAC--CGUCUUa----CGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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