miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6664 5' -53.3 NC_001847.1 + 111079 1.1 0.003798
Target:  5'- cCCGUGAGAACGCUGGCAGAAUGCCAGc -3'
miRNA:   3'- -GGCACUCUUGCGACCGUCUUACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 8266 1.1 0.003798
Target:  5'- cCCGUGAGAACGCUGGCAGAAUGCCAGc -3'
miRNA:   3'- -GGCACUCUUGCGACCGUCUUACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 126621 0.97 0.028472
Target:  5'- aCGUGAGAACaCUGGCAGAAUGCCAGg -3'
miRNA:   3'- gGCACUCUUGcGACCGUCUUACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 23808 0.97 0.028472
Target:  5'- aCGUGAGAACaCUGGCAGAAUGCCAGg -3'
miRNA:   3'- gGCACUCUUGcGACCGUCUUACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 42170 0.78 0.385974
Target:  5'- gCCG-GcGggUGCUGGCGGAAUGCgAGg -3'
miRNA:   3'- -GGCaCuCuuGCGACCGUCUUACGgUC- -5'
6664 5' -53.3 NC_001847.1 + 31813 0.77 0.439454
Target:  5'- gCgGUGGGcGGCGCgggGGCAGAGUGCgAGg -3'
miRNA:   3'- -GgCACUC-UUGCGa--CCGUCUUACGgUC- -5'
6664 5' -53.3 NC_001847.1 + 82304 0.77 0.439454
Target:  5'- aCCGgggcggGAGAAUGCgGGCGGggUcGCCGGc -3'
miRNA:   3'- -GGCa-----CUCUUGCGaCCGUCuuA-CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 126864 0.76 0.51682
Target:  5'- uUGUGcGAACGCUGGCAuucUGCCAGc -3'
miRNA:   3'- gGCACuCUUGCGACCGUcuuACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 24051 0.76 0.51682
Target:  5'- uUGUGcGAACGCUGGCAuucUGCCAGc -3'
miRNA:   3'- gGCACuCUUGCGACCGUcuuACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 42004 0.74 0.599081
Target:  5'- cCCGcgGGGGGCGCcGGCAGcccgGCCAGc -3'
miRNA:   3'- -GGCa-CUCUUGCGaCCGUCuua-CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 28949 0.73 0.651542
Target:  5'- gCCGUGGaGACGCUGGCcgcggcGGggUuuacGCCGGg -3'
miRNA:   3'- -GGCACUcUUGCGACCG------UCuuA----CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 4195 0.72 0.72098
Target:  5'- cCCGUGGGccgcGCGCaGGCAGccaaagcccugcgcGGUGCCGGc -3'
miRNA:   3'- -GGCACUCu---UGCGaCCGUC--------------UUACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 16352 0.71 0.773497
Target:  5'- cCUG-GAG-GCGCUGGCGGc-UGCCGGu -3'
miRNA:   3'- -GGCaCUCuUGCGACCGUCuuACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 102678 0.71 0.783031
Target:  5'- aUGUGAuGAacGCGCUGGCGGGcguGUGCUg- -3'
miRNA:   3'- gGCACU-CU--UGCGACCGUCU---UACGGuc -5'
6664 5' -53.3 NC_001847.1 + 65539 0.71 0.783031
Target:  5'- aCCGaGGGGGCGCUcGCGGAcgGCUAc -3'
miRNA:   3'- -GGCaCUCUUGCGAcCGUCUuaCGGUc -5'
6664 5' -53.3 NC_001847.1 + 128118 0.7 0.801663
Target:  5'- aCGUGGcgcuGGCGCUGGCGGAugcgcgGCCGc -3'
miRNA:   3'- gGCACUc---UUGCGACCGUCUua----CGGUc -5'
6664 5' -53.3 NC_001847.1 + 24093 0.7 0.810742
Target:  5'- gUCGUGAGA--GCUGGCGcGggUcCCAGg -3'
miRNA:   3'- -GGCACUCUugCGACCGU-CuuAcGGUC- -5'
6664 5' -53.3 NC_001847.1 + 126906 0.7 0.810742
Target:  5'- gUCGUGAGA--GCUGGCGcGggUcCCAGg -3'
miRNA:   3'- -GGCACUCUugCGACCGU-CuuAcGGUC- -5'
6664 5' -53.3 NC_001847.1 + 5312 0.7 0.819649
Target:  5'- aCGgcGAGggUcCUGGCAGAagGCCGGc -3'
miRNA:   3'- gGCa-CUCuuGcGACCGUCUuaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 108125 0.7 0.819649
Target:  5'- aCGgcGAGggUcCUGGCAGAagGCCGGc -3'
miRNA:   3'- gGCa-CUCuuGcGACCGUCUuaCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.