Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6664 | 5' | -53.3 | NC_001847.1 | + | 30358 | 0.7 | 0.836917 |
Target: 5'- cCCG-GGGAgGCGCUGGCGGc--GCCGc -3' miRNA: 3'- -GGCaCUCU-UGCGACCGUCuuaCGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 133171 | 0.7 | 0.836917 |
Target: 5'- cCCG-GGGAgGCGCUGGCGGc--GCCGc -3' miRNA: 3'- -GGCaCUCU-UGCGACCGUCuuaCGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 16809 | 0.69 | 0.845262 |
Target: 5'- gUCGcgGAGAACuCgGGCAGcGGUGCCGGg -3' miRNA: 3'- -GGCa-CUCUUGcGaCCGUC-UUACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 94353 | 0.69 | 0.869043 |
Target: 5'- aCGagGAGGACGCUGGCGcGGcgGCg-- -3' miRNA: 3'- gGCa-CUCUUGCGACCGU-CUuaCGguc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 70274 | 0.69 | 0.87653 |
Target: 5'- aCCGcGAGGACGCgcgccUGGCGGggUcgcggcgcGCCGc -3' miRNA: 3'- -GGCaCUCUUGCG-----ACCGUCuuA--------CGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 54582 | 0.69 | 0.881635 |
Target: 5'- cCCGcgggcUGGGcGGCGCUGGCGGcgcgcgcccgcgccGAUGCCGa -3' miRNA: 3'- -GGC-----ACUC-UUGCGACCGUC--------------UUACGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 95939 | 0.68 | 0.890811 |
Target: 5'- cCCGgcgccGGAACGCUGGCGGGcgaGCguGa -3' miRNA: 3'- -GGCac---UCUUGCGACCGUCUua-CGguC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 125209 | 0.68 | 0.890811 |
Target: 5'- ---cGAGucccaGACGCUGGCAGccgccUGCCGGg -3' miRNA: 3'- ggcaCUC-----UUGCGACCGUCuu---ACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 103354 | 0.68 | 0.897594 |
Target: 5'- cCCGacgcgGGGAACGUggcGGCGGAc-GCCAGc -3' miRNA: 3'- -GGCa----CUCUUGCGa--CCGUCUuaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 108626 | 0.68 | 0.897594 |
Target: 5'- uCCGgGGGAcggcgggcgACGCU-GCAGAAgugGCCGGg -3' miRNA: 3'- -GGCaCUCU---------UGCGAcCGUCUUa--CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 541 | 0.68 | 0.897594 |
Target: 5'- cCCGacgcgGGGAACGUggcGGCGGAc-GCCAGc -3' miRNA: 3'- -GGCa----CUCUUGCGa--CCGUCUuaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 95508 | 0.68 | 0.904134 |
Target: 5'- cCCGUGGGc---CUGGCGGGcgcGCCAGg -3' miRNA: 3'- -GGCACUCuugcGACCGUCUua-CGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 67769 | 0.68 | 0.910428 |
Target: 5'- -aGUGcGaAGCGCUGGCAGAA-GCUg- -3' miRNA: 3'- ggCACuC-UUGCGACCGUCUUaCGGuc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 33218 | 0.68 | 0.916473 |
Target: 5'- aCGUGAuggcGAUGCUGGCcGAGUGCg-- -3' miRNA: 3'- gGCACUc---UUGCGACCGuCUUACGguc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 59551 | 0.68 | 0.916473 |
Target: 5'- gCgGUGGGGGCgGCgggGGCGG--UGCCGGc -3' miRNA: 3'- -GgCACUCUUG-CGa--CCGUCuuACGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 41534 | 0.67 | 0.922268 |
Target: 5'- gCCGgccgGAGcaccugGGCGaUGGCAGAGUGCgAGc -3' miRNA: 3'- -GGCa---CUC------UUGCgACCGUCUUACGgUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 102671 | 0.67 | 0.927811 |
Target: 5'- gCCGcGAGGGCgggggggcgggGCgggGGCAGGGcGCCGGg -3' miRNA: 3'- -GGCaCUCUUG-----------CGa--CCGUCUUaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 51369 | 0.67 | 0.933102 |
Target: 5'- aCCGUGAcgguGACGCUcGCGGAG-GCCGc -3' miRNA: 3'- -GGCACUc---UUGCGAcCGUCUUaCGGUc -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 74955 | 0.67 | 0.942464 |
Target: 5'- gCCGUuuauuuguuuauuGGGGACaGCgacggGGCGGGGcGCCAGg -3' miRNA: 3'- -GGCA-------------CUCUUG-CGa----CCGUCUUaCGGUC- -5' |
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6664 | 5' | -53.3 | NC_001847.1 | + | 71213 | 0.67 | 0.942932 |
Target: 5'- cCCGcGGccGCGCUGGguGAuggaguGUGCCAu -3' miRNA: 3'- -GGCaCUcuUGCGACCguCU------UACGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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