miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6664 5' -53.3 NC_001847.1 + 41534 0.67 0.922268
Target:  5'- gCCGgccgGAGcaccugGGCGaUGGCAGAGUGCgAGc -3'
miRNA:   3'- -GGCa---CUC------UUGCgACCGUCUUACGgUC- -5'
6664 5' -53.3 NC_001847.1 + 33218 0.68 0.916473
Target:  5'- aCGUGAuggcGAUGCUGGCcGAGUGCg-- -3'
miRNA:   3'- gGCACUc---UUGCGACCGuCUUACGguc -5'
6664 5' -53.3 NC_001847.1 + 59551 0.68 0.916473
Target:  5'- gCgGUGGGGGCgGCgggGGCGG--UGCCGGc -3'
miRNA:   3'- -GgCACUCUUG-CGa--CCGUCuuACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 67769 0.68 0.910428
Target:  5'- -aGUGcGaAGCGCUGGCAGAA-GCUg- -3'
miRNA:   3'- ggCACuC-UUGCGACCGUCUUaCGGuc -5'
6664 5' -53.3 NC_001847.1 + 95508 0.68 0.904134
Target:  5'- cCCGUGGGc---CUGGCGGGcgcGCCAGg -3'
miRNA:   3'- -GGCACUCuugcGACCGUCUua-CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 108626 0.68 0.897594
Target:  5'- uCCGgGGGAcggcgggcgACGCU-GCAGAAgugGCCGGg -3'
miRNA:   3'- -GGCaCUCU---------UGCGAcCGUCUUa--CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 541 0.68 0.897594
Target:  5'- cCCGacgcgGGGAACGUggcGGCGGAc-GCCAGc -3'
miRNA:   3'- -GGCa----CUCUUGCGa--CCGUCUuaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 103354 0.68 0.897594
Target:  5'- cCCGacgcgGGGAACGUggcGGCGGAc-GCCAGc -3'
miRNA:   3'- -GGCa----CUCUUGCGa--CCGUCUuaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 125209 0.68 0.890811
Target:  5'- ---cGAGucccaGACGCUGGCAGccgccUGCCGGg -3'
miRNA:   3'- ggcaCUC-----UUGCGACCGUCuu---ACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 95939 0.68 0.890811
Target:  5'- cCCGgcgccGGAACGCUGGCGGGcgaGCguGa -3'
miRNA:   3'- -GGCac---UCUUGCGACCGUCUua-CGguC- -5'
6664 5' -53.3 NC_001847.1 + 54582 0.69 0.881635
Target:  5'- cCCGcgggcUGGGcGGCGCUGGCGGcgcgcgcccgcgccGAUGCCGa -3'
miRNA:   3'- -GGC-----ACUC-UUGCGACCGUC--------------UUACGGUc -5'
6664 5' -53.3 NC_001847.1 + 70274 0.69 0.87653
Target:  5'- aCCGcGAGGACGCgcgccUGGCGGggUcgcggcgcGCCGc -3'
miRNA:   3'- -GGCaCUCUUGCG-----ACCGUCuuA--------CGGUc -5'
6664 5' -53.3 NC_001847.1 + 94353 0.69 0.869043
Target:  5'- aCGagGAGGACGCUGGCGcGGcgGCg-- -3'
miRNA:   3'- gGCa-CUCUUGCGACCGU-CUuaCGguc -5'
6664 5' -53.3 NC_001847.1 + 16809 0.69 0.845262
Target:  5'- gUCGcgGAGAACuCgGGCAGcGGUGCCGGg -3'
miRNA:   3'- -GGCa-CUCUUGcGaCCGUC-UUACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 30358 0.7 0.836917
Target:  5'- cCCG-GGGAgGCGCUGGCGGc--GCCGc -3'
miRNA:   3'- -GGCaCUCU-UGCGACCGUCuuaCGGUc -5'
6664 5' -53.3 NC_001847.1 + 133171 0.7 0.836917
Target:  5'- cCCG-GGGAgGCGCUGGCGGc--GCCGc -3'
miRNA:   3'- -GGCaCUCU-UGCGACCGUCuuaCGGUc -5'
6664 5' -53.3 NC_001847.1 + 108125 0.7 0.819649
Target:  5'- aCGgcGAGggUcCUGGCAGAagGCCGGc -3'
miRNA:   3'- gGCa-CUCuuGcGACCGUCUuaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 5312 0.7 0.819649
Target:  5'- aCGgcGAGggUcCUGGCAGAagGCCGGc -3'
miRNA:   3'- gGCa-CUCuuGcGACCGUCUuaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 24093 0.7 0.810742
Target:  5'- gUCGUGAGA--GCUGGCGcGggUcCCAGg -3'
miRNA:   3'- -GGCACUCUugCGACCGU-CuuAcGGUC- -5'
6664 5' -53.3 NC_001847.1 + 126906 0.7 0.810742
Target:  5'- gUCGUGAGA--GCUGGCGcGggUcCCAGg -3'
miRNA:   3'- -GGCACUCUugCGACCGU-CuuAcGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.