miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6664 5' -53.3 NC_001847.1 + 32968 0.66 0.966578
Target:  5'- gCCGggGAGGccagagGCGCcggggcgGGCAGGGcgGCCGGa -3'
miRNA:   3'- -GGCa-CUCU------UGCGa------CCGUCUUa-CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 5312 0.7 0.819649
Target:  5'- aCGgcGAGggUcCUGGCAGAagGCCGGc -3'
miRNA:   3'- gGCa-CUCuuGcGACCGUCUuaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 128118 0.7 0.801663
Target:  5'- aCGUGGcgcuGGCGCUGGCGGAugcgcgGCCGc -3'
miRNA:   3'- gGCACUc---UUGCGACCGUCUua----CGGUc -5'
6664 5' -53.3 NC_001847.1 + 8266 1.1 0.003798
Target:  5'- cCCGUGAGAACGCUGGCAGAAUGCCAGc -3'
miRNA:   3'- -GGCACUCUUGCGACCGUCUUACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 1374 0.66 0.95964
Target:  5'- cCCGUc-GAGCGCcGGCAGcacgcgcUGCCGGu -3'
miRNA:   3'- -GGCAcuCUUGCGaCCGUCuu-----ACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 76165 0.66 0.95964
Target:  5'- gCCGUGuccuCGCUGcaGCAGGAggugaGCCAGc -3'
miRNA:   3'- -GGCACucuuGCGAC--CGUCUUa----CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 74168 0.66 0.947474
Target:  5'- gCCGUGGGcGCGCgcaGCGGGGacGCCAa -3'
miRNA:   3'- -GGCACUCuUGCGac-CGUCUUa-CGGUc -5'
6664 5' -53.3 NC_001847.1 + 41534 0.67 0.922268
Target:  5'- gCCGgccgGAGcaccugGGCGaUGGCAGAGUGCgAGc -3'
miRNA:   3'- -GGCa---CUC------UUGCgACCGUCUUACGgUC- -5'
6664 5' -53.3 NC_001847.1 + 541 0.68 0.897594
Target:  5'- cCCGacgcgGGGAACGUggcGGCGGAc-GCCAGc -3'
miRNA:   3'- -GGCa----CUCUUGCGa--CCGUCUuaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 30358 0.7 0.836917
Target:  5'- cCCG-GGGAgGCGCUGGCGGc--GCCGc -3'
miRNA:   3'- -GGCaCUCU-UGCGACCGUCuuaCGGUc -5'
6664 5' -53.3 NC_001847.1 + 125209 0.68 0.890811
Target:  5'- ---cGAGucccaGACGCUGGCAGccgccUGCCGGg -3'
miRNA:   3'- ggcaCUC-----UUGCGACCGUCuu---ACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 95508 0.68 0.904134
Target:  5'- cCCGUGGGc---CUGGCGGGcgcGCCAGg -3'
miRNA:   3'- -GGCACUCuugcGACCGUCUua-CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 19512 0.66 0.966578
Target:  5'- gUCGcGGGAucGCGCUugcGGCAGAAacggcaGCCGGa -3'
miRNA:   3'- -GGCaCUCU--UGCGA---CCGUCUUa-----CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 95939 0.68 0.890811
Target:  5'- cCCGgcgccGGAACGCUGGCGGGcgaGCguGa -3'
miRNA:   3'- -GGCac---UCUUGCGACCGUCUua-CGguC- -5'
6664 5' -53.3 NC_001847.1 + 97624 0.66 0.963223
Target:  5'- aCCGUcGAGggUGCguccaGGCGGcgcGCCAa -3'
miRNA:   3'- -GGCA-CUCuuGCGa----CCGUCuuaCGGUc -5'
6664 5' -53.3 NC_001847.1 + 33218 0.68 0.916473
Target:  5'- aCGUGAuggcGAUGCUGGCcGAGUGCg-- -3'
miRNA:   3'- gGCACUc---UUGCGACCGuCUUACGguc -5'
6664 5' -53.3 NC_001847.1 + 94353 0.69 0.869043
Target:  5'- aCGagGAGGACGCUGGCGcGGcgGCg-- -3'
miRNA:   3'- gGCa-CUCUUGCGACCGU-CUuaCGguc -5'
6664 5' -53.3 NC_001847.1 + 24093 0.7 0.810742
Target:  5'- gUCGUGAGA--GCUGGCGcGggUcCCAGg -3'
miRNA:   3'- -GGCACUCUugCGACCGU-CuuAcGGUC- -5'
6664 5' -53.3 NC_001847.1 + 50848 0.66 0.963223
Target:  5'- gCCG-GGGGGCGCUGGU-GAugacGUCGGa -3'
miRNA:   3'- -GGCaCUCUUGCGACCGuCUua--CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 32928 0.66 0.955824
Target:  5'- aCGgGAGGAgGCcGGCGGcgggGCCGGg -3'
miRNA:   3'- gGCaCUCUUgCGaCCGUCuua-CGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.