miRNA display CGI


Results 1 - 20 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 1216 0.66 0.935394
Target:  5'- gGUGUucuuuuAGCGCGCGG----GCGCCCg -3'
miRNA:   3'- gUAUAu-----UCGCGCGCUguagCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 44918 0.66 0.935394
Target:  5'- ------cGUGCGCGACGcgCGCGUgCUg -3'
miRNA:   3'- guauauuCGCGCGCUGUa-GCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 60644 0.66 0.935394
Target:  5'- -----cAGCGCGCGGCGcaggCGCGgCUg -3'
miRNA:   3'- guauauUCGCGCGCUGUa---GCGCgGGg -5'
6665 5' -53.9 NC_001847.1 + 104192 0.66 0.935394
Target:  5'- ----cGAGCGC-CGGCAgcaCGCGCUgCCg -3'
miRNA:   3'- guauaUUCGCGcGCUGUa--GCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 37349 0.66 0.935895
Target:  5'- ------cGCGCGCGACcguggcggagcuggCGCGUCUCa -3'
miRNA:   3'- guauauuCGCGCGCUGua------------GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 54245 0.66 0.935394
Target:  5'- --cGUGGGCaGCGCuGCgGUgGCGCCCg -3'
miRNA:   3'- guaUAUUCG-CGCGcUG-UAgCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 134150 0.66 0.935394
Target:  5'- ----gGAGCGCGUGcCGcCGCcggcggcggaaGCCCCg -3'
miRNA:   3'- guauaUUCGCGCGCuGUaGCG-----------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 60468 0.66 0.935394
Target:  5'- ----cGGGCGCGUccGcCAUgGCGCCgCCg -3'
miRNA:   3'- guauaUUCGCGCG--CuGUAgCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 49293 0.66 0.939812
Target:  5'- ----gGAGC-CGCGAC-UCGCugcuggcggugcuGCCCCu -3'
miRNA:   3'- guauaUUCGcGCGCUGuAGCG-------------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 5199 0.66 0.940291
Target:  5'- ------cGCgaGCGCGGCAagCGCGCCgCg -3'
miRNA:   3'- guauauuCG--CGCGCUGUa-GCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 131157 0.66 0.935394
Target:  5'- -------nCGCGgGGCcgCGCGCCCg -3'
miRNA:   3'- guauauucGCGCgCUGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 122871 0.66 0.940291
Target:  5'- --gGUGGGCGCgcuuggacucGCGggacugguggGCAUCGCaGCCCUc -3'
miRNA:   3'- guaUAUUCGCG----------CGC----------UGUAGCG-CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 63166 0.66 0.935394
Target:  5'- ----cAGGCGCGC-ACgucggucgcgGUCGCGCgCCa -3'
miRNA:   3'- guauaUUCGCGCGcUG----------UAGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 39833 0.66 0.957442
Target:  5'- ----cGAGCGCuuccuGCGugG-CGCGCgCCa -3'
miRNA:   3'- guauaUUCGCG-----CGCugUaGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 131647 0.66 0.935394
Target:  5'- ----gGAGCGUGaCGGCGcCGCuGCCgCCg -3'
miRNA:   3'- guauaUUCGCGC-GCUGUaGCG-CGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 113033 0.66 0.935394
Target:  5'- ----aGGGCGCGCccGCuGUCGC-CCCCg -3'
miRNA:   3'- guauaUUCGCGCGc-UG-UAGCGcGGGG- -5'
6665 5' -53.9 NC_001847.1 + 55455 0.66 0.935394
Target:  5'- -----uGGCGC-CGGCGgggCGCGCgCCg -3'
miRNA:   3'- guauauUCGCGcGCUGUa--GCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 69020 0.66 0.935394
Target:  5'- --gAUGAGCuGCuGCGguGCGUCGCGCUg- -3'
miRNA:   3'- guaUAUUCG-CG-CGC--UGUAGCGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 43794 0.66 0.935394
Target:  5'- ------cGCGCGCGcCggCGCGCCg- -3'
miRNA:   3'- guauauuCGCGCGCuGuaGCGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 93576 0.66 0.935394
Target:  5'- ----aAGGCGCGCucgGACAcgaCGCGCUCg -3'
miRNA:   3'- guauaUUCGCGCG---CUGUa--GCGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.